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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063609 ID=TCONS_00063609|Name=TCONS_00063609|organism=Clytia hemisphaerica|type=transcript|length=377bp
GACGGACTCATATCTACATGCTGATAACTGCTCAGGACAGAATAAGAACA
ATGCTTTTATTTGGTATTTGATGTGGAGGATTTTGAATGGTTTCCATGAA
AAGATTGAGTACAGTTTCATGATAGCCGGCCACACGAAATTCAGCTGTGA
CAGGTGCTTCGGCAGCTTCAAAAAGAAACTACGATCAACTCGAGTATCAT
CTCCGTACGAGATCGCTGATGTTTACGACCAATCAAAATGTAATTTCGCT
GTACTTGTTGGTAACCACAACAAAGATATCACTGTTCAAACGTATGACTG
GTCACATTACTTTGAAAAGGAGTTACGGTTCCAGACCATCAAAGATATTC
TTAAATATCACCATTTCAGGATGTCGA Run BLAST on NCBI transcript from alignment at scaffold_396:11192..14416+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063609 ID=TCONS_00063609|Name=TCONS_00063609|organism=Clytia hemisphaerica|type=transcript|length=3225bp|location=Sequence derived from alignment at scaffold_396:11192..14416+ (Clytia hemisphaerica)
GACGGACTCATATCTACATGCTGATAACTGCTCAGGTAATGCTGGACTAC
AAAAATGTTAGAATTTGCTGACAACCAGGTGACCTAGCCAAAATTTAAAT
GctatctttttaaagaaaactttcCCATTCAAAAAAACTGttgtcttaat
tttttttattgtaaactACAGGCTTGATATATGCTAAAGTTTTTCTCAGA
TTTGAGCCTGGATATGCTTATGAAAAATGTTGACTGACTCTATTTTTGTG
TGTACTAATCAAGGAATTTCGCACAAATCAAATTTTGCaagttaactttt
ttttttttttcactgggTTAATGGCAAATCCATTGTGTCGCTGGGTGAGA
TTTTGGATCGGTCCAATACTCGGTTCCATGAAAATAActgaaatgaaatt
tcagtccgCCCTCAAAAATGCATGTAAACAATTTGGAaaaatatcaacca
gtcccTGAACTGAGATTTAcacttgaaaaaaattgcaaaaattaatccag
tTTAAGTAAATATATTCTTTTCACTTTCAGGACAGAATAAGAACAATGCT
TTTATTTGGTATTTGATGTGGAGGATNGataaacaaaaattgcaaaaatt
aatccagtTTAAGTAAATATATTATTTTCACTTTCAGGACAGAATAAGAA
CAATGCTTTTATTTGGTATTTGATGTGGAGGATTTTGAATGGTTTCCATG
AAAAGATTGAGTACAGTTTCATGATAGCCGGCCACACGAAATTCAGCTGT
GACAGgtaataaaagaattttgttGGGTAAGTTTGTTGTTTCAAGCAAGG
TAAACAGACTTAAAAATTAATTCCACTTTTTAAGTTGGTTTATTACCTGT
CACAGCTTTTAATTCAGACTTAAGTCTTGTTCAGCAtaattttagacaaa
atttttaaaacacaattcattaaaaattacaaaaatagttGTCGAATAAA
ACTGAACTTTAAAAAATGGTGGTTGTCGTCACCTATGACCAACCCTTCTC
AAAACTTACCaacccagaaaatttttttactctGAAAATTAAATAGAAAT
TTTGNCAAttcattaaaaattacaaaaatagttGTCGAATAAAACTGAAC
TTTAAAAAATGGTGGTTGTCGTCACCTATGACCAACCCTTCTCAAAACTT
ACCaacccagaaaatttttttactctgaaaattaaatagaaattttgaaa
aatcatcaaaacaaaatatttcttttcgaCCGACCGGTCAATCTAGGGTC
AGGTGATGACAAACCAATATATATTTTCAAGCGCAGCCtaaaatgtatat
tttttgTATCTTCCTTAACGTGCTTCGGCAGCTTCAAAAAGAAACTACGA
TCAACTCGAGTATCATCTCTGATGTTTGCGACTAATCAAAATGTAATTTC
GCTGTACTTGTTGGTAACCACAACAAAGATAtcaccacagatctgtaaag
cccgaaggataTCACTGTTCAAACGTATGACTGTTCACATTACTTTGAAA
AGGAGTTACGGTTCCAGACCATCAAAGATTTTCTTAAATATCACCATTTC
AGGATGTCGAAGGATCAGCCTGGAATTGTTAAGTGTTATAAATCACTAGA
TAATGAACCAGTCGAGTTCTCCATTTTCATTCAGCGAAATCCACCAAAAG
TGACTGCTGCATTACCGAAGATCGTCCCACCGAAAGGATTCACNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCAAACCCACTATCCATATA
ACCCACTCCAACCTGGgccgatttttttcaaaacccccAGAAAGTGTGGG
ATTTTTGGGATTTGTAATAAACCTTCAGTACAACTATTTGATTGATGAAA
TCAATACAACTGGGAAGGGGGCAAATGCAACCATCAGTTATTTACATCAC
TTTTTCGAGTATTATGGAATGGGTGAGACGGACTCATATCTACATGCTGA
TAACTGCTCAGGTAATACTGGACTACAAAAATGTTAGAATTTGCTGACAA
CCAGGTGACCTAGCCAAAATTTAAATGctatctttttaaagaaaactttt
ccattcaaaaaaactgttctcttaattttttttattgtaaactACAGGCT
TGATATATGCTAAAGTTTTTCTCAGATTTGAGCCTGGATATGCTTATGAA
AAATGTTGACTGGCTCTATTTTTGTGTGGACTAATCAAGGAATTTTGCAC
AAATCAAATTTTGCaagttaactttttattttttttcactggGTTAATGC
CAAATCCATTGTGTCGCTGGGTGAGATTTTGGATCGGTCCAATACTCGGT
TCCATGAAAATAActgaaatgaaatttcagtccgCCCCCAAAAATGCATG
TAAACAATTTGGAAAAATATCAACCCGCCCCTGAACTGAGATTTACActt
gaataaacaaaaattgcaaaaattaatccagtTTAAGTAAATATATTCTT
TTCACTTTCAGGACAGAATAAGCACAATGCTTTTATTTGGTATTTGATGT
GGAGGATTTTGAATGGTTTCCATGAAAAGATTGAGTACAGTTTCATGATA
GCCGGCCACATGAAATTCAGCTGTGACAGGTAATAAATGAATTTTGTTGG
GTAAGTTTGTTGTTTCAAGCAAGGTAAAAACAGACTTAAAAATTAATACC
ACTTTAAAAGTTGGTTTATTACCTGTCACAGCTTTTAATTCAGACTTAAG
TCTTGTTCAGCAtaattttagacaaaatttttaaaacataattcattaaa
aattacaaaaatagttGTCGAATAAGACTGAACTTTAAAAAATGGTGGTT
GTCGTCACCTATGACCAACCCTTCTCGAAACTTACCaacccagaaaattt
ttttactctgaaaattaaatagaaattttgaaaaatcttcaaaacaaaat
atttcttttcgaCCGTCCGGCCAATCTAGGGTCAGGTGATGACAAACCAA
TATATATTTTCAAGCGCAGCCTAAAATGTATATTTTTGTATCTTTCTTAA
GGTGCTTCGGCAGCTTCAAAAAGAAACTACGATCAACTCGAGTATCATCT
CCGTACGAGATCGCTGATGTTTACGACCAATCAAAATGTAATTTCGCTGT
ACTTGTTGGTAACCACAACAAAGATATCACTGTTCAAACGTATGACTGGT
CACATTACTTTGAAAAGGAGTTACGGTTCCAGACCATCAAAGATATTCTT
AAATATCACCATTTCAGGATGTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063609-exon-scaffold_396-1491911889:11192..11226 | TCONS_00063609-exon-scaffold_396-1491911889:11192..11226 | Clytia hemisphaerica | exon |
| TCONS_00063609-exon-scaffold_396-1510915933:11192..11226 | TCONS_00063609-exon-scaffold_396-1510915933:11192..11226 | Clytia hemisphaerica | exon |
| TCONS_00063609-exon-scaffold_396-1575043694:11192..11226 | TCONS_00063609-exon-scaffold_396-1575043694:11192..11226 | Clytia hemisphaerica | exon |
| TCONS_00063609-exon-scaffold_396-1491911889:11829..11946 | TCONS_00063609-exon-scaffold_396-1491911889:11829..11946 | Clytia hemisphaerica | exon |
| TCONS_00063609-exon-scaffold_396-1510915933:11829..11946 | TCONS_00063609-exon-scaffold_396-1510915933:11829..11946 | Clytia hemisphaerica | exon |
| TCONS_00063609-exon-scaffold_396-1575043694:11829..11946 | TCONS_00063609-exon-scaffold_396-1575043694:11829..11946 | Clytia hemisphaerica | exon |
| TCONS_00063609-exon-scaffold_396-1491911889:14193..14416 | TCONS_00063609-exon-scaffold_396-1491911889:14193..14416 | Clytia hemisphaerica | exon |
| TCONS_00063609-exon-scaffold_396-1510915933:14193..14416 | TCONS_00063609-exon-scaffold_396-1510915933:14193..14416 | Clytia hemisphaerica | exon |
| TCONS_00063609-exon-scaffold_396-1575043694:14193..14416 | TCONS_00063609-exon-scaffold_396-1575043694:14193..14416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_396 | supercontig | scaffold_396:11192..14416 + |
Blast
The following BLAST results are available for this feature:
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