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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063606 ID=TCONS_00063606|Name=TCONS_00063606|organism=Clytia hemisphaerica|type=transcript|length=3289bpRun BLAST on NCBI protein sequence of TCONS_00063606-protein >TCONS_00063606-protein ID=TCONS_00063606-protein|Name=TCONS_00063606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp MFSKILTCSRIIHQLTSRNTFLLRSSVLSCSNCYTQSAQSQKNFQNKNFIRun BLAST on NCBI transcript from alignment at scaffold_395:9772..25889+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063606 ID=TCONS_00063606|Name=TCONS_00063606|organism=Clytia hemisphaerica|type=transcript|length=16118bp|location=Sequence derived from alignment at scaffold_395:9772..25889+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_395:9772..25889+ >TCONS_00063606 ID=TCONS_00063606|Name=TCONS_00063606|organism=Clytia hemisphaerica|type=CDS|length=12738bp|location=Sequence derived from alignment at scaffold_395:9772..25889+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063606 vs. Swiss-Prot (Human)
Match: LIPT (Lipoyltransferase 1, mitochondrial OS=Homo sapiens GN=LIPT1 PE=1 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 6.564e-59 Identity = 118/316 (37.34%), Postives = 194/316 (61.39%), Query Frame = 3
Query: 501 NAKVIVSKSNCPFKNLAYENFIYENEAFLDNQKTLFIWRNRSSVIIGRHQNPWKEVNLKQLKEKKIHLCRRMSGGGSVYHDLGNVNFTFFTSKANYDRKKNLEFIINTLKQ-DFGICLERNNKDDILLENQYKVSGTAAKLGLKTCYHHCTLLCDSNLANLRGLLKNPFGLNISTNATESVKSNTRNLFIRNDFDFDKIVDXXXXXXXKQYSKTIVMPSLHILDP---TFIDQVSDQAKELQSWQWTFGKSPKFSIQR--ELIYDNVQKVSVKLIIHKGN----ICDFEL------IKQNDNKSISHVMTKLCGSE 1400
N ++ S SN ++NLA E++I+++ L+ + LF W+N SV+IGRHQNPW+E NL ++E+ I L RR SGGG+VYHD+GN+N TFFT+K YDR +NL+ I+ L + ++ + D+LL+ Q+K+SGTA+K+G T YHHCTLLC ++ L LLK+P+ I +NAT S+ S +NL ++ +++ + ++ + Y + + +H+++P T ++ +AKELQ+W+W +GK+PKFSI ++Y+ + +K+ I N IC+ E ++ D + S + +K C +E
Sbjct: 30 NGLILQSISNDVYQNLAVEDWIHDHMN-LEGKPILFFWQNSPSVVIGRHQNPWQECNLNLMREEGIKLARRRSGGGTVYHDMGNINLTFFTTKKKYDRMENLKLIVRALNAVQPQLDVQATKRFDLLLDGQFKISGTASKIGRTTAYHHCTLLCSTDGTFLSSLLKSPYQ-GIRSNATASIPSLVKNLLEKDPTLTCEVLMNAVATEYAAYHQ--IDNHIHLINPTDETLFPGINSKAKELQTWEWIYGKTPKFSINTSFHVLYEQ-SHLEIKVFIDIKNGRIEICNIEAPDHWLPLEIRDKLNSSLIGSKFCPTE 340 The following BLAST results are available for this feature:
BLAST of TCONS_00063606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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