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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063604 ID=TCONS_00063604|Name=TCONS_00063604|organism=Clytia hemisphaerica|type=transcript|length=3381bp
TGTTCAAATGGACTAACGTACTAAGATTAAATTTGAAGCCTGGTATATAA
ATATAAAAGCGTGACGGAACAAGTGAAGGCATTTGAGATGATGCAAGGGG
GTTGAAAAGAGCATAAAAAGAGATGTGTAAAGAGGTTCTTGACAATTATT
GAGAAACTCTAAGGAAGAATTGCATTTTTGACTTTAGTCGAGGTATGTCT
ATTGTGTTGTTGCTTCTTGTGGTATAGCATGGTTTTAGTAGCAGGACAAT
TAAGCTCACTGGGTTGTTGTTTAGATTTCAAATATCCATCTTGTAATATG
TGAAGAAAAGTaaatcaatcaaagtttgaTCGAATGCTTTAAAGACGGCC
TTATTAGGGTAAGGGGAATGAAAATGGTCTTTTATATTTAACAGAttcgt
atttttcaaggaattGAATGAATAAGTTATAGTGTTCAGCATTTTTCATA
CTTTACTTTTGGCATTGTGATGAGGAAGAAGTGAAATTccatcaaaattt
tctgaagatGATGTCAATAtacgaaaaagaagaagaagggtTTTTCAATA
AATGACTTCTTGAAGTCATCATTGATGAGATTGTAAGAAACATTAAGGAT
GTCATAAAACTTGAACTGTTTGCACGAATTATTACATAGCGTGGTAGTTG
TCGTTAGTGAACTCCTAGGTAGAAAATTAAAcgaaaaacaaaggaaccag
tGCCCTAGGaatttaaaaagtaacaaattttGATTGGATGACGAACTCAC
TATTTTTGTTGTTAGAAACGATGGGAAAATGCCTTCCACAAGGTCAAGTA
CTTATCAATCATGTGATACAACAACTGATTTTTAACACAGGCAGATAAAA
attacaaatcaaaacaacagtGTAACTCTTAGAAACATGTCCTGTTTGAA
AAAAGGTTAAGTGCTTGTCTACTAAGTTGGACTATAAAGTATTCTGAGAG
TTAGGGCAATTTTGGTAATACTGTATTTTATCAtgtattgttaaccggtt
acttttccaaagcgggctacatggctttttgAGCAATGCAATTGGgttga
ctgtttttttttcgggctgtactgtgaaatattgccctcggtcaacacAA
CGGCCTCGCAAGCTCAGTGGTTACTTGACCTCgtcaatatttctcagtac
agccctcactaacctgtcattattgtattaaaagaaaaagtttttcttta
taccaTTATAAAATAAGCGATAAGACAGACGAAAATCTTTTCACTTGGCC
CCAGTCTGATGATTTTAACCGGTGCTCTAAATCCTAAATCTCGGTGGCGG
TGTAGCTTAGTGTGCTTGAGGAGCATGTTCTGAAAGCGCaactgagaaaa
aaatcaaaataagagaGGCATTTCAATGTAATTAATTGTCAAAAGTTGTC
GTAATTAAAAATGATTAACAATGCATTTATGTAATTTGAGTAGGATTTTG
TAAGGACGTCAAGAAGACATTCTTCATAGAACGGTAATCAGATATTACTA
TAAAGGAATGCGCTTGATTGTCACAAATAATCATTTTGTGTTTGTAAGTC
GGAGAGGCATCATCTTGAGGGTGGTGAagcattttgagatttttttcaaa
tatgtttTGAGAAACGTCTTCAAAGACTTTTCTATGAGTTTGGTTATTTT
AAAAGCGGTTTTTGGTTTGGTTTGTAGAAATTTCTGAGAttcctatgttt
tttttttgttacttATTATTTTCAAGTACATAACCACCCTCGGTATTATT
TCGgagttttataatttttctattCTCTATATTTTCAGACAcaaataaaa
tacaaagaaaaatttaaagaatcAAAATGACTTACAGCTGTGGAGAACTG
ATTGATGATGATGTCGAAACATTGGAATATTGTCCGCGATCATTCATTGA
AGAAAATCCGGACGAAATGAATAAACCCGAAAAGATCACACCAAAACGAG
GCTCCTTTACTGAATTACGTAATACCATTCTAACTAAAGTTTCAACACCG
CGCGGTAATCGGCGTTCAAAAACACTGATTCAAAGATGTGAAAGTGCGGG
TAAAGGATTGAAAGATAAACTAGGCCGAACATCTAGTGTAGATGTGTTGG
GAAACCCGCTTCGTAAACCACAACAAAAACATCACAAGAGCTTGGAAGAA
GACTTCATGTTTACTGGATTCAGTCAATTAGCTGATAAAACCCTAGTTAC
ACGATCAAAAGTAGCAGAAGTGCGACGAACCAGCGCTGATAACGCAACAT
ATGAAGAGGAGAAAAGACGAGAACTTTTAAATCGAATGAAAGATCGATCA
ATGAGTTGTCCGTCTTACCCAACAATCAAAGAGGAAGAAATCAAAGTCGT
CAAATCATCAAGTTACGATAGCAGTAACTATAAACAAACAGACTCTGATA
AACTAAACATCGAGTACCCGACTATTAAAATCGAACTTtgcaaaaatgaa
agtttgGGTCCAAAAAGTGCACCACTTCAACGTAAAAATTCTAAATGGAG
TGACAAAAGCGCTAGTATGTCTAGCCTGAgttcaacaaaaacaaacggGA
GTAATGGATACCTTTCTAGTGACAATTCATCTGTTTTTAACAGTGAAACT
TCTATAAATGGAGGACGGGACGAAATGCCCATGCACCGAAGACCGGTCAG
TTTTATTGATATCTTCAAAAGAGACAATATTGATGAATTTTCAGCCCCAT
CACATAACCATACATACACTTTACCGCGAGGCTTACCACGAAACACCACA
GACTGCAATTGTAATactttacagaaaaatgggGAGCTGTCCAGCAGCGA
AACAGACTTGGATCACGCGCGCACCGTACGCGGTCGCGCATCCAGTATGA
TTGAAATCGGGGCGAATAAGAATACCTCGATGTCACAACCCAAAACACAA
CGTCGACATGAACAATTGAAAAAGACAACCAGTAATATTTATGGTCTCGC
TTCACCAGCTGCTCTTAAGAAactgtttaaaaagaaaaggcGTTCGATGC
CCTCAGACACCCGTAAAGCGCCCGCAACGCCTGTGTTGGCTGAGGGCCAA
AGGCGGTGCATTCATATAGAGTCATTTGTATAAAAAGAAGCATGAATTCT
AATGACCCTTGGAATCTCGTGAATAACTTGAAATGACAAGATAGTTAGGT
TTTGACTCGAATGTATGTCTGCAATAACTTTTGTATAGATTTCTTTGTAT
TCGACATTTTATATATCATggattattttttataattttaaatatttttg
tacatATAAATATCATGGAAAATTTATTATggaaattttaaatcttaaaa
acgaAATTTATGTATCAGTAAACGAATGGAATAACATTTATAAGATATGA
CTATTGGTCTTACTAAAGATCACAAAGAAAC Run BLAST on NCBI protein sequence of TCONS_00063604-protein >TCONS_00063604-protein ID=TCONS_00063604-protein|Name=TCONS_00063604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MTYSCGELIDDDVETLEYCPRSFIEENPDEMNKPEKITPKRGSFTELRNT
ILTKVSTPRGNRRSKTLIQRCESAGKGLKDKLGRTSSVDVLGNPLRKPQQ
KHHKSLEEDFMFTGFSQLADKTLVTRSKVAEVRRTSADNATYEEEKRREL
LNRMKDRSMSCPSYPTIKEEEIKVVKSSSYDSSNYKQTDSDKLNIEYPTI
KIELCKNESLGPKSAPLQRKNSKWSDKSASMSSLSSTKTNGSNGYLSSDN
SSVFNSETSINGGRDEMPMHRRPVSFIDIFKRDNIDEFSAPSHNHTYTLP
RGLPRNTTDCNCNTLQKNGELSSSETDLDHARTVRGRASSMIEIGANKNT
SMSQPKTQRRHEQLKKTTSNIYGLASPAALKKLFKKKRRSMPSDTRKAPA
TPVLAEGQRRCIHIESFV Run BLAST on NCBI transcript from alignment at scaffold_394:156372..159752 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063604 ID=TCONS_00063604|Name=TCONS_00063604|organism=Clytia hemisphaerica|type=transcript|length=3381bp|location=Sequence derived from alignment at scaffold_394:156372..159752 (Clytia hemisphaerica)
GTTTCTTTGTGATCTTTAGTAAGACCAATAGTCATATCTTATAAATGTTA
TTCCATTCGTTTACTGATACATAAATTtcgtttttaagatttaaaatttc
cATAATAAATTTTCCATGATATTTATatgtacaaaaatatttaaaattat
aaaaaataatccATGATATATAAAATGTCGAATACAAAGAAATCTATACA
AAAGTTATTGCAGACATACATTCGAGTCAAAACCTAACTATCTTGTCATT
TCAAGTTATTCACGAGATTCCAAGGGTCATTAGAATTCATGCTTCTTTTT
ATACAAATGACTCTATATGAATGCACCGCCTTTGGCCCTCAGCCAACACA
GGCGTTGCGGGCGCTTTACGGGTGTCTGAGGGCATCGAACgccttttctt
tttaaacagtTTCTTAAGAGCAGCTGGTGAAGCGAGACCATAAATATTAC
TGGTTGTCTTTTTCAATTGTTCATGTCGACGTTGTGTTTTGGGTTGTGAC
ATCGAGGTATTCTTATTCGCCCCGATTTCAATCATACTGGATGCGCGACC
GCGTACGGTGCGCGCGTGATCCAAGTCTGTTTCGCTGCTGGACAGCTCcc
catttttctgtaaagtATTACAATTGCAGTCTGTGGTGTTTCGTGGTAAG
CCTCGCGGTAAAGTGTATGTATGGTTATGTGATGGGGCTGAAAATTCATC
AATATTGTCTCTTTTGAAGATATCAATAAAACTGACCGGTCTTCGGTGCA
TGGGCATTTCGTCCCGTCCTCCATTTATAGAAGTTTCACTGTTAAAAACA
GATGAATTGTCACTAGAAAGGTATCCATTACTCccgtttgtttttgttga
acTCAGGCTAGACATACTAGCGCTTTTGTCACTCCATTTAGAATTTTTAC
GTTGAAGTGGTGCACTTTTTGGACCcaaactttcatttttgcaAAGTTCG
ATTTTAATAGTCGGGTACTCGATGTTTAGTTTATCAGAGTCTGTTTGTTT
ATAGTTACTGCTATCGTAACTTGATGATTTGACGACTTTGATTTCTTCCT
CTTTGATTGTTGGGTAAGACGGACAACTCATTGATCGATCTTTCATTCGA
TTTAAAAGTTCTCGTCTTTTCTCCTCTTCATATGTTGCGTTATCAGCGCT
GGTTCGTCGCACTTCTGCTACTTTTGATCGTGTAACTAGGGTTTTATCAG
CTAATTGACTGAATCCAGTAAACATGAAGTCTTCTTCCAAGCTCTTGTGA
TGTTTTTGTTGTGGTTTACGAAGCGGGTTTCCCAACACATCTACACTAGA
TGTTCGGCCTAGTTTATCTTTCAATCCTTTACCCGCACTTTCACATCTTT
GAATCAGTGTTTTTGAACGCCGATTACCGCGCGGTGTTGAAACTTTAGTT
AGAATGGTATTACGTAATTCAGTAAAGGAGCCTCGTTTTGGTGTGATCTT
TTCGGGTTTATTCATTTCGTCCGGATTTTCTTCAATGAATGATCGCGGAC
AATATTCCAATGTTTCGACATCATCATCAATCAGTTCTCCACAGCTGTAA
GTCATTTTgattctttaaatttttctttgtattttatttgTGTCTGAAAA
TATAGAGaatagaaaaattataaaactcCGAAATAATACCGAGGGTGGTT
ATGTACTTGAAAATAATaagtaacaaaaaaaaaacataggaaTCTCAGAA
ATTTCTACAAACCAAACCAAAAACCGCTTTTAAAATAACCAAACTCATAG
AAAAGTCTTTGAAGACGTTTCTCAaaacatatttgaaaaaaatctcaaaa
tgctTCACCACCCTCAAGATGATGCCTCTCCGACTTACAAACACAAAATG
ATTATTTGTGACAATCAAGCGCATTCCTTTATAGTAATATCTGATTACCG
TTCTATGAAGAATGTCTTCTTGACGTCCTTACAAAATCCTACTCAAATTA
CATAAATGCATTGTTAATCATTTTTAATTACGACAACTTTTGACAATTAA
TTACATTGAAATGCCtctcttattttgatttttttctcagttGCGCTTTC
AGAACATGCTCCTCAAGCACACTAAGCTACACCGCCACCGAGATTTAGGA
TTTAGAGCACCGGTTAAAATCATCAGACTGGGGCCAAGTGAAAAGATTTT
CGTCTGTCTTATCGCTTATTTTATAAtggtataaagaaaaactttttctt
ttaatacaataatgacaggttagtgagggctgtactgagaaatattgacG
AGGTCAAGTAACCACTGAGCTTGCGAGGCCGTTgtgttgaccgagggcaa
tatttcacagtacagcccgaaaaaaaaacagtcaacCCAATTGCATTGCT
caaaaagccatgtagcccgctttggaaaagtaaccggttaacaatacaTG
ATAAAATACAGTATTACCAAAATTGCCCTAACTCTCAGAATACTTTATAG
TCCAACTTAGTAGACAAGCACTTAACCTTTTTTCAAACAGGACATGTTTC
TAAGAGTTACactgttgttttgatttgtaatTTTTATCTGCCTGTGTTAA
AAATCAGTTGTTGTATCACATGATTGATAAGTACTTGACCTTGTGGAAGG
CATTTTCCCATCGTTTCTAACAACAAAAATAGTGAGTTCGTCATCCAATC
aaaatttgttactttttaaattCCTAGGGCactggttcctttgtttttcg
TTTAATTTTCTACCTAGGAGTTCACTAACGACAACTACCACGCTATGTAA
TAATTCGTGCAAACAGTTCAAGTTTTATGACATCCTTAATGTTTCTTACA
ATCTCATCAATGATGACTTCAAGAAGTCATTTATTGAAAAacccttcttc
ttctttttcgtaTATTGACATCatcttcagaaaattttgatggAATTTCA
CTTCTTCCTCATCACAATGCCAAAAGTAAAGTATGAAAAATGCTGAACAC
TATAACTTATTCATTCaattccttgaaaaatacgaaTCTGTTAAATATAA
AAGACCATTTTCATTCCCCTTACCCTAATAAGGCCGTCTTTAAAGCATTC
GAtcaaactttgattgatttACTTTTCTTCACATATTACAAGATGGATAT
TTGAAATCTAAACAACAACCCAGTGAGCTTAATTGTCCTGCTACTAAAAC
CATGCTATACCACAAGAAGCAACAACACAATAGACATACCTCGACTAAAG
TCAAAAATGCAATTCTTCCTTAGAGTTTCTCAATAATTGTCAAGAACCTC
TTTACACATCTCTTTTTATGCTCTTTTCAACCCCCTTGCATCATCTCAAA
TGCCTTCACTTGTTCCGTCACGCTTTTATATTTATATACCAGGCTTCAAA
TTTAATCTTAGTACGTTAGTCCATTTGAACA Coding sequence (CDS) from alignment at scaffold_394:156372..159752 >TCONS_00063604 ID=TCONS_00063604|Name=TCONS_00063604|organism=Clytia hemisphaerica|type=CDS|length=1257bp|location=Sequence derived from alignment at scaffold_394:156372..159752 (Clytia hemisphaerica)
TTATACAAATGACTCTATATGAATGCACCGCCTTTGGCCCTCAGCCAACA
CAGGCGTTGCGGGCGCTTTACGGGTGTCTGAGGGCATCGAACgccttttc
tttttaaacagtTTCTTAAGAGCAGCTGGTGAAGCGAGACCATAAATATT
ACTGGTTGTCTTTTTCAATTGTTCATGTCGACGTTGTGTTTTGGGTTGTG
ACATCGAGGTATTCTTATTCGCCCCGATTTCAATCATACTGGATGCGCGA
CCGCGTACGGTGCGCGCGTGATCCAAGTCTGTTTCGCTGCTGGACAGCTC
cccatttttctgtaaagtATTACAATTGCAGTCTGTGGTGTTTCGTGGTA
AGCCTCGCGGTAAAGTGTATGTATGGTTATGTGATGGGGCTGAAAATTCA
TCAATATTGTCTCTTTTGAAGATATCAATAAAACTGACCGGTCTTCGGTG
CATGGGCATTTCGTCCCGTCCTCCATTTATAGAAGTTTCACTGTTAAAAA
CAGATGAATTGTCACTAGAAAGGTATCCATTACTCccgtttgtttttgtt
gaacTCAGGCTAGACATACTAGCGCTTTTGTCACTCCATTTAGAATTTTT
ACGTTGAAGTGGTGCACTTTTTGGACCcaaactttcatttttgcaAAGTT
CGATTTTAATAGTCGGGTACTCGATGTTTAGTTTATCAGAGTCTGTTTGT
TTATAGTTACTGCTATCGTAACTTGATGATTTGACGACTTTGATTTCTTC
CTCTTTGATTGTTGGGTAAGACGGACAACTCATTGATCGATCTTTCATTC
GATTTAAAAGTTCTCGTCTTTTCTCCTCTTCATATGTTGCGTTATCAGCG
CTGGTTCGTCGCACTTCTGCTACTTTTGATCGTGTAACTAGGGTTTTATC
AGCTAATTGACTGAATCCAGTAAACATGAAGTCTTCTTCCAAGCTCTTGT
GATGTTTTTGTTGTGGTTTACGAAGCGGGTTTCCCAACACATCTACACTA
GATGTTCGGCCTAGTTTATCTTTCAATCCTTTACCCGCACTTTCACATCT
TTGAATCAGTGTTTTTGAACGCCGATTACCGCGCGGTGTTGAAACTTTAG
TTAGAATGGTATTACGTAATTCAGTAAAGGAGCCTCGTTTTGGTGTGATC
TTTTCGGGTTTATTCATTTCGTCCGGATTTTCTTCAATGAATGATCGCGG
ACAATATTCCAATGTTTCGACATCATCATCAATCAGTTCTCCACAGCTGT
AAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063604-exon-scaffold_394-1491911889:156372..159752 | TCONS_00063604-exon-scaffold_394-1491911889:156372..159752 | Clytia hemisphaerica | exon |
| TCONS_00063604-exon-scaffold_394-1510915933:156372..159752 | TCONS_00063604-exon-scaffold_394-1510915933:156372..159752 | Clytia hemisphaerica | exon |
| TCONS_00063604-exon-scaffold_394-1575043694:156372..159752 | TCONS_00063604-exon-scaffold_394-1575043694:156372..159752 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_394 | supercontig | scaffold_394:156372..159752 . |
Blast
The following BLAST results are available for this feature:
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