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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063601 ID=TCONS_00063601|Name=TCONS_00063601|organism=Clytia hemisphaerica|type=transcript|length=2544bp
CAGAAAAGTAGCGAAAAAAAGCGAAAATACAAGCGAAAGGAGATCAAAAA
TTGTTTTAATTTCTGACGTCAAAAATGAAAAATAGGACAAATGATGTCAA
CGCAATGTTCATATTCCTTTGAAAAAAGTGACGTCACAATGAATTTTCCT
AACGACGGGCAACTATGTGCAGTGTAAGCCTGTTGTCATGCAAAAAGAAC
CAATCACGTTGCGCAAAAAGCTGTGTAGCCGGTTAACAATCAAAAGATGA
GACTTTTTAAACAAAATTTGTTAAACAAGATTTTTGGTTAAAGGGAAGGC
ATTCACAATCATTAAAAACAATGGAATTGAAAAAGATCAAACGCACAATG
TCTGATGAATTAAATGATACTTTATCAACCAACCCATTAGAGATAGAATC
TGAGGGAGAGTAGGATAAAAGTATTTTGAAACAATCAGGGTGAAAATGGT
CACTGCATATCGTGAAGTCAGGTAACTTGCATCAGAGGAGGCTAACATGT
ATAGCCCTCAAATGAAGATCTGGCTGGTCATTAAAACtattattattatt
attattacaacAAATACAAAGTTCAGGCACATCGTGGGACTCAAGAACTG
GtctttatttatttacaataaatagCGTAGTTCATGGTTGGCCCATACTT
TGTTTAAATTATCCTTATACAATTTTATCGATGATGCTTCTGCCACGTAT
TTTGGAATCGCGTTCCATGTTGAGATAGTTCTATAAAAGAAGGACTTGCT
TTGTGCACCGCATATTCCATCGTCCGGGAAGTTCATTTGAAGTTCATGTA
TATGCTTTCTACATGGTCGCGTCCTTTTAATAAACTTTTTTGGTGTTATT
TTACTATCATAGATGTGGATATGCTTATATACCTAAACCATGTCACAGAA
AAGTCTTCGAAACCCAAGGGATGGTAGCGGCAAACATCTTAGTCTTTCTG
CATATGGTAACCGTGAGATTGGTTTTACTAGTTTTGTCACACGTCTTTGA
ACACTCTcgcaggctgcatcatttgaaaatttcaggcgtgtggtcaatca
cactcctaaaaccttaattttagtaatttaggcgtgtgataaggagtgct
atgcaCAANCTcgcaggctgcatcatttgaaaatttcaggcgtgtggtca
atcacactcctaaaaccttaattttagtaatttaggcgtgtgataaggag
tgctatgTACAACTTTCAGTTGTGAAACTTACTTTATGGGGTGTGATTGA
TCGCACTCCTCAgacattttaggtgtgtgtgaaATGATGCAGCCTGCTCT
CGATCAGGTTGATAGATCGACGTAATCTTGGTTGTCATACTGATTGAGCG
TACTCTAAATGTGGTCGTACAAAGGTGGTATACAGTGGTATACAGTGTCT
GGAATATGTGAGGACTAGGGTAATGAAATTCTCTTTTGAGCAATCCCAAC
ATAGAATTAGCTTTGTTTACTTGCTTAGCGATATGTTCTTCAAATGAAGG
TTCTATCAAAACACCGAGATCTTTTTCTGAGAAGACATGTTCAAGTTGCT
CTCCATTTAGTTGATATGGGTGTGCATGCTTTATGTTCTCGAATTTACCT
ATCGATAAAACGTGGCATTTGTCGGGGTGGAATTTCAACAGCGACTCACA
GGACCATCTTTCAAGTGCTTCAATGTCATGTTGTATGATTAAGGAGTCAA
GAATGGAATTGATTTCCTTTATTATCTTTGTGTCATCTGCAAACAAGAAA
ATGCTTGATAGAACTTGATGTTCTATTCTAGATAGAGGCTGCTAGAGGTA
GCGtcaaatacaaagttaaatcaaaacaaacctgatttacaaaatttgcg
TGTGGTAAAATGTGTATCTCCTAATCATAAAATGATGTCACGCATAATTA
TGTTTAATATCATTATTAAATTTGAGGTTACACGTACAGCAGCCATTGAG
AAACATTTGAATTCCAACCATCTTGATATTTATAATCTTGCATGATCTTT
TATTATCCAACCATGCTCTTTTATTTTACCCGCGATTCTGTTGGCCAGTA
ACTCGCCAAATATTACTCGTGCGATAAATATcagattctaaaatggtagg
GTAGGGTAGAGTAGATAtgcgagcagagctgcatagttcatttgttttga
aattttgctgctttggttggtcaggCATTTNctgcatagttcatttgttt
tgaaattttgctgctttggttggtcaggcatttgatggctatgcaactTT
CCCTCCACTGAAAAAATTCCACCTTTtgttgttctaatgattataatatc
tCTTTATAAGaagctttgttgtctttttaatctttgtgtaaacttgcata
tgttttgcatattttccaactaaatccaaccacggctttttcttcttgta
tttttgcatacaattcaagatgaggtgaggcgaaaaggtctattacagtC
GCTGTTTCAGAAAATTATATCTGTTTATTCGAGCTGTTCTGAGTATAAAA
TTAGTGCCTTGAAAATTGAAGGATCTGTTCTAAAAATCCAGACG Run BLAST on NCBI transcript from alignment at scaffold_394:1987..4530 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063601 ID=TCONS_00063601|Name=TCONS_00063601|organism=Clytia hemisphaerica|type=transcript|length=2544bp|location=Sequence derived from alignment at scaffold_394:1987..4530 (Clytia hemisphaerica)
CGTCTGGATTTTTAGAACAGATCCTTCAATTTTCAAGGCACTAATTTTAT
ACTCAGAACAGCTCGAATAAACAGATATAATTTTCTGAAACAGCGactgt
aatagaccttttcgcctcacctcatcttgaattgtatgcaaaaatacaag
aagaaaaagccgtggttggatttagttggaaaatatgcaaaacatatgca
agtttacacaaagattaaaaagacaacaaagcttCTTATAAAGagatatt
ataatcattagaacaacaAAAGGTGGAATTTTTTCAGTGGAGGGAAagtt
gcatagccatcaaatgcctgaccaaccaaagcagcaaaatttcaaaacaa
atgaactatgcagNAAATGcctgaccaaccaaagcagcaaaatttcaaaa
caaatgaactatgcagctctgctcgcaTATCTACTCTACCCTACcctacc
attttagaatctgATATTTATCGCACGAGTAATATTTGGCGAGTTACTGG
CCAACAGAATCGCGGGTAAAATAAAAGAGCATGGTTGGATAATAAAAGAT
CATGCAAGATTATAAATATCAAGATGGTTGGAATTCAAATGTTTCTCAAT
GGCTGCTGTACGTGTAACCTCAAATTTAATAATGATATTAAACATAATTA
TGCGTGACATCATTTTATGATTAGGAGATACACATTTTACCACAcgcaaa
ttttgtaaatcaggtttgttttgatttaactttgtatttgaCGCTACCTC
TAGCAGCCTCTATCTAGAATAGAACATCAAGTTCTATCAAGCATTTTCTT
GTTTGCAGATGACACAAAGATAATAAAGGAAATCAATTCCATTCTTGACT
CCTTAATCATACAACATGACATTGAAGCACTTGAAAGATGGTCCTGTGAG
TCGCTGTTGAAATTCCACCCCGACAAATGCCACGTTTTATCGATAGGTAA
ATTCGAGAACATAAAGCATGCACACCCATATCAACTAAATGGAGAGCAAC
TTGAACATGTCTTCTCAGAAAAAGATCTCGGTGTTTTGATAGAACCTTCA
TTTGAAGAACATATCGCTAAGCAAGTAAACAAAGCTAATTCTATGTTGGG
ATTGCTCAAAAGAGAATTTCATTACCCTAGTCCTCACATATTCCAGACAC
TGTATACCACTGTATACCACCTTTGTACGACCACATTTAGAGTACGCTCA
ATCAGTATGACAACCAAGATTACGTCGATCTATCAACCTGATCGAGAGCA
GGCTGCATCATttcacacacacctaaaatgtcTGAGGAGTGCGATCAATC
ACACCCCATAAAGTAAGTTTCACAACTGAAAGTTGTAcatagcactcctt
atcacacgcctaaattactaaaattaaggttttaggagtgtgattgacca
cacgcctgaaattttcaaatgatgcagcctgcgAGNTTGtgcatagcact
ccttatcacacgcctaaattactaaaattaaggttttaggagtgtgattg
accacacgcctgaaattttcaaatgatgcagcctgcgAGAGTGTTCAAAG
ACGTGTGACAAAACTAGTAAAACCAATCTCACGGTTACCATATGCAGAAA
GACTAAGATGTTTGCCGCTACCATCCCTTGGGTTTCGAAGACTTTTCTGT
GACATGGTTTAGGTATATAAGCATATCCACATCTATGATAGTAAAATAAC
ACCAAAAAAGTTTATTAAAAGGACGCGACCATGTAGAAAGCATATACATG
AACTTCAAATGAACTTCCCGGACGATGGAATATGCGGTGCACAAAGCAAG
TCCTTCTTTTATAGAACTATCTCAACATGGAACGCGATTCCAAAATACGT
GGCAGAAGCATCATCGATAAAATTGTATAAGGATAATTTAAACAAAGTAT
GGGCCAACCATGAACTACGctatttattgtaaataaataaagaCCAGTTC
TTGAGTCCCACGATGTGCCTGAACTTTGTATTTgttgtaataataataat
aataataGTTTTAATGACCAGCCAGATCTTCATTTGAGGGCTATACATGT
TAGCCTCCTCTGATGCAAGTTACCTGACTTCACGATATGCAGTGACCATT
TTCACCCTGATTGTTTCAAAATACTTTTATCCTACTCTCCCTCAGATTCT
ATCTCTAATGGGTTGGTTGATAAAGTATCATTTAATTCATCAGACATTGT
GCGTTTGATCTTTTTCAATTCCATTGTTTTTAATGATTGTGAATGCCTTC
CCTTTAACCAAAAATCTTGTTTAACAAATTTTGTTTAAAAAGTCTCATCT
TTTGATTGTTAACCGGCTACACAGCTTTTTGCGCAACGTGATTGGTTCTT
TTTGCATGACAACAGGCTTACACTGCACATAGTTGCCCGTCGTTAGGAAA
ATTCATTGTGACGTCACTTTTTTCAAAGGAATATGAACATTGCGTTGACA
TCATTTGTCCTATTTTTCATTTTTGACGTCAGAAATTAAAACAATTTTTG
ATCTCCTTTCGCTTGTATTTTCGCTTTTTTTCGCTACTTTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063601-exon-scaffold_394-1491911889:1987..4530 | TCONS_00063601-exon-scaffold_394-1491911889:1987..4530 | Clytia hemisphaerica | exon |
| TCONS_00063601-exon-scaffold_394-1510915933:1987..4530 | TCONS_00063601-exon-scaffold_394-1510915933:1987..4530 | Clytia hemisphaerica | exon |
| TCONS_00063601-exon-scaffold_394-1575043694:1987..4530 | TCONS_00063601-exon-scaffold_394-1575043694:1987..4530 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_394 | supercontig | scaffold_394:1987..4530 . |
Blast
The following BLAST results are available for this feature:
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