TCONS_00063593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063593
Unique NameTCONS_00063593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063593 ID=TCONS_00063593|Name=TCONS_00063593|organism=Clytia hemisphaerica|type=transcript|length=431bp
GAATCAAGATTCGAACGTTTGTTAGAAAAGCTGACcaatcagaaattttc
atgaccATATttggaaattcgaacgtttccGAATCGAACGTCTCTGGAAA
TGATCGTTGTTAAACATTTTCGAAATGGTTAGTTCATTGAAAGTCTTCTA
CTACGTAACTTCATTGAAGATTTTTCTacgataaaactccaataaatTTC
ATCATGAGAGAGTGTATTTCTATCCACGTCGGACAAGCCGGTGTCCAAAT
CGGAAACGCTTGTTGGGAATTGTACTGTTTGGAACATGGAATCCAACCTG
ACGGTCAGATGCCATCAGACAAAACCATTGGAGGTGGTGATGATTCATTC
AACACTTTCTTCAGTGAAACTGGTGCTGGTAAACACGTCCCAAGAGCTGT
CTTCGTTGATTTGGAACCAACCGTTGTTGGT
Run BLAST on NCBI

transcript from alignment at scaffold_394:174173..174839+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063593 ID=TCONS_00063593|Name=TCONS_00063593|organism=Clytia hemisphaerica|type=transcript|length=667bp|location=Sequence derived from alignment at scaffold_394:174173..174839+ (Clytia hemisphaerica)
GAATCAAGATTCGAACGTTTGTTAGAAAAGCTGACcaatcagaaattttc
atgaccATATttggaaattcgaacgtttccGAATCGAACGTCTCTGGAAA
TGATCGTTGTTAAACATTTTCGAAATGGTTAGTTCATTGAAAGTCTTCTA
CTACGTAACTTCATTGAAGATTTTTCTacgataaaactccaataaatTTC
ATCATGGTAAGCATTTGGACTtctttattttaaaaacattgggAGAAGAT
TTGTTATAGTGATACTGTTGGGTTCTACCTTTTATTTCCTAACTTTTACA
AAAGGTAAAGCGAATATCAAAGGTTGGTTCTTAAGGGGATTAAGcaaatc
ttgatttttgttttgctgAAGATTTTCTGTGGATATCCCGTACAAGGATT
CAGCAAGTTCGAGGCTTTGACTTCATTCTTTTCATTCTTTAGAGAGAGTG
TATTTCTATCCACGTCGGACAAGCCGGTGTCCAAATCGGAAACGCTTGTT
GGGAATTGTACTGTTTGGAACATGGAATCCAACCTGACGGTCAGATGCCA
TCAGACAAAACCATTGGAGGTGGTGATGATTCATTCAACACTTTCTTCAG
TGAAACTGGTGCTGGTAAACACGTCCCAAGAGCTGTCTTCGTTGATTTGG
AACCAACCGTTGTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039857XLOC_039857Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063593-exon-scaffold_394-1491911889:174173..174378TCONS_00063593-exon-scaffold_394-1491911889:174173..174378Clytia hemisphaericaexon
TCONS_00063593-exon-scaffold_394-1510915933:174173..174378TCONS_00063593-exon-scaffold_394-1510915933:174173..174378Clytia hemisphaericaexon
TCONS_00063593-exon-scaffold_394-1575043694:174173..174378TCONS_00063593-exon-scaffold_394-1575043694:174173..174378Clytia hemisphaericaexon
TCONS_00063593-exon-scaffold_394-1491911889:174615..174839TCONS_00063593-exon-scaffold_394-1491911889:174615..174839Clytia hemisphaericaexon
TCONS_00063593-exon-scaffold_394-1510915933:174615..174839TCONS_00063593-exon-scaffold_394-1510915933:174615..174839Clytia hemisphaericaexon
TCONS_00063593-exon-scaffold_394-1575043694:174615..174839TCONS_00063593-exon-scaffold_394-1575043694:174615..174839Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_394supercontigscaffold_394:174173..174839 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
176.441	185.968	210.161	215.575	6.65518	3.55299	2.04194	2.08153	5.49603	5.5488	4.22319	4.37051	2.23819	2.18035	2.964	4.55881	10.8836	12.0633	4.43561	3.98925	45.2349	49.1237	89.2757	87.9273	6425.1	4838.97	155.82	144.445	78.1182	79.7619
Blast
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BLAST of TCONS_00063593 vs. Swiss-Prot (Human)
Match: TBA3C (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 7.505e-48
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:  204 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVV 428
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVV
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVV 75
The following BLAST results are available for this feature:
BLAST of TCONS_00063593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA3C7.505e-48100.00Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
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