TCONS_00063586 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063586
Unique Name	TCONS_00063586
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2733

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_394:46196..55730+

transcript sequence

>TCONS_00063586 ID=TCONS_00063586|Name=TCONS_00063586|organism=Clytia hemisphaerica|type=transcript|length=2733bp
AATCCATTTTCAGCTGGGAATATTATATTGTATTGTTGTGAAAATTGTGT
ATTTCCCAAATGAAAATGAGATTTCGAAGACATTCTGCCCCTTTGGGCAT
TTTATATgagcagcaaaatttgaagttgGATTCGATCTCATCAATCATGG
AAAGCAcgaaagaacaaaagaagaaagaacCCATTCAAGAGGTACTTGCA
TGTGGCAAACCATACCCAATGGTGGTACTTCCAGTGGAAGGTGATTATTG
GATGGAGGGGACGTACCATATCCTATCACGTGATATGTACGATCGGCCCA
TCTTCCCGACTATCGATCGTAGTCGGTGTGTCTTGGATGACGACCAAACT
GTTTATAATTACCGAAGAAATTTCGCTGGAAAAGAACATACAAATTACGT
CGGCAACGATTCTAAGCATGGTCCAGTCCTGATGTCTGTTCTCCTTGACT
CATCCCAACCCGTATCCGAACGTCCCGCCCCTAGTCCGCCATCCGCCCAA
ATGGCAAACCCCCCTCAACGCCCTAAAGAACAATTCAAAGTGATTTTACG
TTTGAAGAATAAAACGATCGAAAAAACGATATCGCCCTCGCATTTTTCTT
CCGATTGTCCGGGACCGAGAGAAATTATGAAGTATATGCTCGAAGATGAT
GTGGACGTTGACCGATTCCATCCAGTCGTCGTACCGCGTGCTAGCGAAGA
AATTATGCGCTTCGACGAACACTCTGTTTCCAACTGTTACAAAATTGGAG
TTCTGCATCAGAAACACGGACAGATTTCAGAAGAAGATTATCTCCAAAAT
CCCGAAGAAACGCCAGCTTTGCGAGAATTTTTAGACTGCATTGCAGATCG
AGTTGATTTAAAAGATTTCGAGAGTTACCGAGGTGGCTTGGATGTAAAAC
ATGGGCAAACTGGAGAACATTCGTATTACACTAATTATAAAGAGAGAGAA
GTGATGTTCCACGTTTCATCCATGATCCCTTACAAACCGAACGATTCTCA
ACAACTCAGTCGGAAACGTCACATCGGTAATGACGTCGTCAGTATCGTCT
TCCAAGAAGAAAACACGCCGTTTTGTCCGAACTCGATCCGCTCGCATTTC
CTACACTGTTTCATCGTCGTTCAAGTAGAAAACCCTAACTCAGAGGAAAC
CTATTATAAAGTTTCAGTGGCGGCTAAAGAGGGCGTTCCAAAATTTGCGC
CCAGTCTTCCGAACCCTTGCATATTCAAGAGAAGCGACGAGCTAAAGGAT
TTTCTGTTGACAAAGATTTTGAACGCTGAAAATGCGGCTGTCAAAAGCGA
AAAGTTCTCAGCTCTAGCGGAGCGTACAAGGAGTATGCTTTTACAAGGAA
TAGTAACCGACTTCATCGCCAAAAACGAGAAGATGTTGGATGATGATAAT
CTCTCGAACGGTAGCGACAACACAGATACACACCACGTCAAATCTGGAAG
CTTCTTATCCACGTTCCGGTCTGCAATTTATCGATCGTCACAACGTAGCG
AGCAAGACAATATCTCGATATCTAGTAGCTCTAGTAGTCTCCCTTCAACA
CTAAATGGTAGTCACTCACTTTCGTTGAACGATTTGAATAACTTTGATAG
TGAAGAACACCGAAGAAAAGATATGTCTATGTCAACAAGTCCACGTCCAG
GGCGAAAGACTAAAAAAGACAAAGACAAACATAGCAAGAAAGATCGCGCA
AAAAGTGCAATCTTATCAATCCTTCCGCCCGTCTCTCATCCAATCAGCGA
GCAGGATTTTAACGACTTAGCATCACCAACTCTCCTTCAAATCTCCACAA
AACAATCACCAACTTCTTCCAATTCAAATCTCAACGAGCAACCAACGTCA
CGACCGCGCACGCGCAGTAAATTTTATACTAACCAATTATTTGACGAATT
CGAAGAGCCAGTGACGTTGACATCGACCAATCAGATTTCACCACGTTGTC
ACACCATGAGTGGTGGAGAAACAAGAAAAGAAAATGGTAGTGATCCATCC
ATACAGCAGCCGAAAATCAGTATCACGGCAACCACGGTGACTAGTTCAGA
CGAGGAAAATAATAACGCGAACGACCCTTCACCTTCATCTAGTTCTTCTA
CAGATACAGCCAAAGAGGAAATTGAGAAATTACGAGCGGAAATACATAAA
CTGAAAATCGACAAAATGGATCTCATACGGCAGAACgtgaAATTGAAAGA
ACAAAAAAAGTCACGTCAGCCGAAACAAGCGTGGTCAGATCCATCAACGG
GAGATTAAGAAATTAAACGATAAAACGCAGACCAACGGTGATTATCGTTC
TCTATCACTCAAACATTCGTATGACCCGAGAAAAATGTACAACGCAACTG
CTACTACGTTTGCCGAGTTTGTTTGACCACGACTGATGTTGAACACGCTA
GAATGAAAATgatatatttttgtgaaatgacAGATATAGTCATCAGTGAT
GTTAGATTTCTGCATTTTTATCTTTGTTAAACTAGTCCCGATAGCGATAG
GCCAACcgtctttttcaaaaaatgtcataacatttgaaaaaaaaatttca
gaaatacGCCATTTTGCTGCAACTCTTGGGTTTGATGATAAATTTTGTTG
AGTTATATATCTACCAAATTAATTAGGCTTTTACCTTTCTTTTGTAAATA
TCTTTataattttgctgacatcaacATTTATATTTTCTATTTAGTTTGTG
TATTTATTTGATATAAAAATGATAATATGCTTG

Run BLAST on NCBI

transcript from alignment at scaffold_394:46196..55730+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063586 ID=TCONS_00063586|Name=TCONS_00063586|organism=Clytia hemisphaerica|type=transcript|length=9535bp|location=Sequence derived from alignment at scaffold_394:46196..55730+ (Clytia hemisphaerica)
AATCCATTTTCAGCTGGGAATATTATATTGTATTGTTGTGAAAATTGTGT
ATTTCCCAAATGAAAATGAGATTTCGAAGACATTCTGCCCCTTTGGGCAT
TTTATATgaggtatttttttcatttaagattTGTCCTTCTATCAatattt
gtttaattttatagtatgtgattattttttgagttttggtCTTAAAGTCA
TCAGTTCTCAATTTGTTTAAATGGATAGCTAGCCTACAGATTTCTCTGGA
AAACCTTATCAAAAGACTTTTATTGTTATTGATACtaattttatacattt
ttatttCGTATCAGGGGGTTTataattttgttattttccTCAATGTTTAG
AATTCGTCGATCCTTTTCGATTCTATAAAATCAGAATGTTCCCATCCttg
agtttgaaaaatattgttttgaagTGATTCGTTTGAAAGCTTATGAGATA
ATTGGAATCAGGAAAGTGTAACATAATCCTTTTTCCTGAAATATCAAACA
CTGATATGCTTCACATATACCGCCAATGTAATCGAATTTGACATTGGAAA
TTCATCCAATGGATAGTCTcaactaatgagaaaataactGTTTTCCCAGT
ATAATGATGTAATAAATATTCCACTCATGAATATCTTATCAACGATCTTT
TATATCTTTAACCAATAATTTATAGATTTTTAGATATTAAGGGATAAGGT
TGAGGGAGGCCATCGCTTTTATTCGAATCAAAGAAAGCTTCGAATCAAAG
AGGCTCAActttgaaagaaagaaacatTGTTAAATCAGCTTCGTTAATTT
AAAGTTTTTCCATTTTCGTTTCGTCCCTGATGCGTTTATTTTTCATATAT
CCTTCTTTCTCTACAgcagcaaaatttgaagttgGATTCGATCTCATCAA
TCATGGAAAGCAcgaaagaacaaaagaagaaagaacCCATTCAAGAGGTT
GGTTTTATCATTTGCCTGGTTGTTTATTTGTTCGGCGGCAGTTTCATCTA
GGGGGCCAATTCTAGGTCGtggaaatggaaaatttttacCAATAAGATTT
TCTTTGGccatttaaaagattttgtcaacaagtggtttttttgtcacttt
ttcccAACGAAGAGGGAACGACCGAACGATAAATGCATAATGCACCTCAA
AGTAAACGATTCGTTAGATTGCCTTGACTCACGAGAGTATAAACTTGAAC
GGAATATTGTTACTAAATcagacttttgaaaaattccccatcacaaaaaa
ttttgtacaattttttgttaataatGATTGCTTATTAAACCCGTCAGTAA
CGACTCCCCGTACACAGGAAGTGTGAAGGTTGGTCGAACGCAAAACTCAT
TTGTATCATGTATCACCCACAATTATGATGTGGTCGGATATAGTATACCA
AAATGAGATTCTTTGACACTATTATTATATATAGCGGCTTATGATTAATG
GCGAAATTgcttttaaattaatttttggaaagtcAATTGTTTGACAACTT
CTACACATGAAACTGACCATTTTTTTGGAAcaaaattttttgggaaatat
tttttctcctaACGTCAGCTCTCTTATAGTCAAATTTTATACGTTGCCTG
ATCCTGTAGCTAACCTGTATACGGGATACGTTGATAAGATACCTTTGGCT
GAACCATAAAAAATTAATAGTTCCCAAACTATGAATTACAATCTTCTAAG
AAAAGTTGATGTTTAAGAGTCCATGAAGCATTCATAAAACGTTTCTGTTT
CAATGTAGGTACTTGCATGTGGCAAACCATACCCAATGGTGGTACTTCCA
GTGGAAGGTGATTATTGGATGGAGGGGACGTACCATATCCTATCACGTGA
TATGTACGATCGGCCCATCTTCCCGACTATCGATCGTAGTCGGTGTGTCT
TGGATGACGACCAAACTGTTTATAATTACCGAAGAAATTTCGCTGGAAAA
GTAAGTTTTTATTATGTTACTTGGATGTTCAAGTATCTGAGCAAAGTTGT
TCAAAGTTCGTTGCCTTCAGAAGCACTTTTTTATGAACACAAAAAACTGA
GCATTGTATTGTAGGTATCGATTTTGATCGTTATATCTTGTTAGAATATA
CCAAGCAAGAAGATATATTACTTCAGATCAATCTGGATTTAAAGAATATT
TAATATTTACAAACTTTTCGATGCCTGGTTTATTTTccaattatttaatt
ttttcatttttaaacttCTTCTCACTTTATTTTCTTAGGAACATACAAAT
TACGTCGGCAACGATTCTAAGCATGGTCCAGTCCTGATGTCTGTTCTCCT
TGACTCATCCCAACCCGTATCCGAACGTCCCGCCCCTAGTCCGCCATCCG
CCCAAATGGCAAACCCCCCTCAACGCCCTAAAGAACAATTCAAAGTGATT
TTACGTTTGAAGAATAAAACGATCGAAAAAACGATATCGCCCTCGCATTT
TTCTTCCGATTGTCCGGGACCGAGAGAAATTATGAAGGTATGTTATAGCt
aagaaatatttcatttcaattcaaGTTTTATAGGTGATGTAcataaattt
cctttttttgaaatttgagtgTTATGGAAAAGGCTTTAAAGGCTTACTTG
GCTACAAATAATCATTTGGGTGGGAATTTCGTCATCTGACTTTCTGACGT
ATATGGAATGTTTTAAACTTTTCTACAAAAGAAATCATAATTTCCAATTC
TCCCTACAGTATATGCTCGAAGATGATGTGGACGTTGACCGATTCCATCC
AGTCGTCGTACCGCGTGCTAGCGAAGAAATTATGCGCTTCGACGAACACT
CTGTTTCCAACTGTTACAAAATTGGAGTTCTGCATCAGAAACACGGACAG
GTCAGTTCTCTTaattgtcaaaataaaaatatgcatCTCAAATAAAAGTA
TTCGGGTTGTTGCTGTACTGCAGCCTTTACTAAAAAGCTCCACGAAAACG
GCTAAATAATACAGTAGTTCCACATTAAATACTTATATTATGCATTTACG
ATTATCTTTAAGCTatcataatataatataataaagagttgacacaatat
ctttgtttcaaactcagagtttcatggtgcacaggcaccaatcttcagtg
aaatatcTTTAAGCTATCAACTTTCCTGATTAACGTTTAGTCTGGTTTTC
AGGAAGAAACATGATTCCATAAGTCTGATTGACACGTTTCTTTTGTCAGA
CTTCTGAAAACGAATAGGTGCCGTCCTGGGAGACGTAGCTCTTCCTCTGT
TCTGAAAAGTCTTTGAGGAAAGTCTGCGTTTTTGAGCCTCTGATTCTTTA
AATCTTTCTTTTAATCCTCACTTCCTCGCCATACTTGACAGCTTCAATGC
TGTATTTATCGTTCAGAtcatttaacaattattttcatcattattatcTC
CATTAGATTTCAGAAGAAGATTATCTCCAAAATCCCGAAGAAACGCCAGC
TTTGCGAGAATTTTTAGACTGCATTGCAGATCGAGTTGATTTAAAAGATT
TCGAGAGTTACCGAGGTGGCTTGGATGTAAAACATGGGCAAACTGGAGAA
CATTCGTATTACACTAATTATAAAGAGAGGTAGGTGGTTTGGAACTAAAT
CTTGTTAAACTACTTCAAGCATCACCGAATACTGGCATATTTAGACAAGC
AATAACTACCAGAGATGGAGTTAGTTGAGCGACTAAGTACAACTTTTAGA
AGTTGTTATAATATCTCGTTTAACCAAGAAAGTATACAGCCAACTTTTTA
CTTGGTGTCCTTTCTATTCGACAGTCCAAGAAgttaaaattgttttcttt
tatcatCTTCCTTCCTTCATATATTTCTTTAGAGAAGTGATGTTCCACGT
TTCATCCATGATCCCTTACAAACCGAACGATTCTCAACAACTCAGTCGGA
AACGTCACATCGGTAATGACGTCGTCAGTATCGTCTTCCAAGAAGAAAAC
ACGCCGTTTTGTCCGAACTCGATCCGCTCGCATTTCCTACACTGTTTCAT
CGTCGTTCAAGTAGAAAACCCTAACTCAGAGGAAACCTATTATAAAGTTT
CAGTGGCGGCTAAAGAGGGCGTTCCAAAATTTGCGCCCAGTCTTCCGAAC
CCTTGCATATTCAAGAGAAGCGACGAGCTAAAGGATTTTCTGTTGACAAA
GATTTTGAACGCTGAAAATGCGGCTGTCAAAAGCGAAAAGTTCTCAGCTC
TAGCGGTAAGTTTATGACTGACATTGATTAAGTCTAAAAGTTATAATGAT
GTAGTTTTCTTTTATTATGAGGACTTATTAGGAAATTCTCCTCTTAAATT
TTCTCACACTATCAGGATGTTAATAATTTAAAATGTATTTGTTAAAGCAC
GTCTTAGTTCACTGTATTATCActtctgatagcgctcacgaaAGAGAATC
TTTCGaaaaaatgcgaaaaaaaaGCGGCTCTGGTGATTGAATAAAGATCC
GATTCTTAAACTTGCTTTTCAACCTGTTCATTTCAACAGGAGCGTACGAG
GAGCATGCTTTTACAAGGAATAGTAACCGACTTCATCGCCAAAAACGAGA
AGATGTTGGATGATGATAATCTCTCGAACGGTAGCGACAACACAGATACA
CACCACGTCAAATCTGGAAGCTTCTTATCCACGTTCCGGTCTGCAATTTA
TCGATCGTCACAACGTAGCGAGCAAGACAATATCTCGATATCTAGTAGCT
CTAGTAGTCTCCCTTCAACACTAAATGGTAGTCACTCACTTTCGTTGAAC
GATTTGAATAACTTTGATAGTGAAGAACACCGAAGAAAAGATATGTCTAT
GTCAACAAGTCCACGTCCAGGGGTGAGcttttctcttattttcttCATCA
ACCGATATTAATGGCATGGAACACACCCCTTAAATCTTTATCAAAACATT
ACTTGGTGTGTGATCATTTAATGAGATGTTTTGCCAAATAATACCTTACA
GAACGTAAATTTGGCTACAATTCCAGCTCGACTGGTTGACTCTGTAGATT
TGACAGGCCCCAcgccatgaaattgaaagtggggggAGGGGGCAATGAAT
ATAAAGTCTAAAGAGGCGcaaccaaaaatttttactttgtaaaaaagggg
ggggggcatggccccCTCTGGTCCCCCCGGTGGCGTGGGcccttgaattt
caaatttgtttcCCATTTAACAAATTCAATTTGAatcttaaatttcttat
tgGTTTTCAAACtctaataatattttttacctATTTTCTCTTTCCAGCGA
AAGACTAAAAAAGACAAAGACAAACATAGCAAGAAAGATCNGGATGTTAA
TAATTTGAAATGTATTTGTTAAAGCACGTCTTAGTTCACTGTATTATCAc
ttctgatagcgctcacgaaAGAGAATCTTTCGAAAAAATGCGAAAAAAGC
GGCTCTGGTGATTGAATAAAGATCTGATTCCTAAACTTGCTTTTCAACCT
GTTCATTTCAACAGGAGCGTACAAGGAGTATGCTTTTACAAGGAATAGTA
ACCGACTTCATCGCCAAAAACGAGAAGATGTTGGATGATGATAATCTCTC
GAACGGTAGCGACAACACAGATACACACCACGTCAAATCTGGAAGCTTCT
TATCCACGTTCCGGTCTGCAATTTATCGATCGTCACAACGTAGCGAGCAA
GACAATATCTCGATATCTAGTAGCTCTAGTAGTCTCCCTTCAACACTAAA
TGGTAGTCACTCACTTTCGTTGAACGATTTGAATAACTTTGATAGTGAAG
AACACCGAAGAAAAGATATGTCTATGTCAACAAGTCCACGTCCAGGGGTG
AGcttttctcttattttcttCATCAACCGATATTAATGGCATGGAACACA
CCCCTTAAATCTTTATCAAAACATTACTTGGTGTGTGATCATTTAATGAG
ATGTTTTGCCAAATAATACCTTACAGAACGTAAATTTGGCTACAATTCCA
GCTCGACTGGTTGACTCTGTAGATTTGACAGGCCCCAcgccatgaaattg
aaagtggggggAGGGGGCAATGAATATAAAGTCTAAAGAGGCGcaaccaa
aaatttttactttgtaaaaaaggggggggggcatggccccCTCTGGTCCC
CCCGGTGGCGTGGGcccttgaatttcaaatttgtttcCCATTTAACAAAT
TCAATTTGAatcttaaatttcttattgGTTTTCAAACtctaataatattt
tttacctATTTTCTCTTTCCAGCGAAAGACTAAAAAAGACAAAGACAAAC
ATAGCAAGAAAGATCGCGCAAAAAGGTAGGATGAAACCAATAGCTTATAA
TTCATgataatttattcaaaaaaatagtTTAGGCTAATTTTTCCATAATA
TATGAATGTTGATTCTTCTATTCATGATTCAATCCATCAATCGATGAATG
CAACGAGTTCGATTTGCTTCATTCAATTCGCGCATtggattgaatatttt
tttgacaaatatcAAGAATCAGAAAAAGGGTGCATTGATAAGTCTTGTGC
GAACAGAAGAAATTTAGTTTGTAAAGTATTTCTTGAAACATGAAATATCT
TTGACTGTTAGTTGCTTCAAGGTTACTTTCAATGAGTTTTCTGCACTTTG
AAACCAAGACGCGCTCAAATgtagaaaacattattttcttttttttttga
aaagtgcacTAGTCACTACTCTTGAAGTTATAGGGTTAAAGAACaaagat
tttatctttttaattttcaatattttttatttttttcactaaatTCCAGT
GCAATCTTATCAATCCTTCCGCCCGTCTCTCATCCAATCAGCGAGCAGGA
TTTTAACGACTTAGCATCACCAACTCTCCTTCAAATCTCCACAAAACAAT
CACCAACTTCTTCCAATTCAAATCTCAACGAGCAACCAACGTCACGACCG
CGCACGCGCAGTAAATTTTATACTAACCAATTATTTGACGAATTCGAAGA
GCCAGTGACGTTGACATCGACCAATCAGATTTCACCACGTTGTCACACCA
TGAGTGGTGGAGAAACAAGAAAAGTAAGCTTTCTTTCAAATTAACGTGTT
TTGTCATTTAAATTTTGCttattaaatttatttatttcgaAAGGTAAAAT
TGTCCAGCCgataatttgaaaagaaaatcctcAGATTTAGTGGgaacaca
ggaacgcgggaatagtgcttataaagagctcttatgaaaaatagaaattg
ccatGGGAAGAGTGGTTTGGAATGACattgtattcagtgaacatatagac
ATAGATCCTAttgcaagtttaatctgcagcgaaatacaacgacgtggttt
aatAGTCTATAGATTTAGAAGAAGATATTCTGAAAATTATTCTTAGAAAT
TCAGGTCTAGAAAAATCGACAACTACTGAAAAATGATCCTTGACATGAAT
GAAGTTATGGATCAATATAGGCCTGCTAATGGTCAGATTTTTTGTAGTTG
GAATTGGTAAAAATTATTATCCTTTCTCGTTCACTTTTTCCATCAGGAAA
ATGGTAGTGATCCATCCATACAGCAGCCGAAAATCAGTATCACGGCAACC
ACGGTGACTAGTTCAGACGAGGAAAATAATAACGCGAACGACCCTTCACC
TTCATCTAGTTCTTCTACAGGTTAGTAATAAACATTTTTCTTAAACCTTA
TCCTAAGATACTTTAATTTGGGAGGGGGTATTTagaggtacaatttccaa
cGCCCTGgcaattagcccccccccccagtgtaCTTAAGTTTGAACATTTT
AAAACCcttctaaaagtttttttctactGGTAGAAAGTGAGCAAAACCAT
GAAACTAAGGTTCGGAGAACAAATTCCCACCTACTTAAAAAGTGTACCGG
AGCACTGATTCAGCGTTTGTCTCGGGTTTTTCTATAGCTAtcactaaaaa
tttctcttggGTCAAACATCTAAATTTATTTTAAGTTGAAGGAAATGGTA
TATAATTACTGTTTCACGGTGAAACAgctatttaaaatatttaaataaaa
acaaagtttccTATACTTCTGACGTCTTACTTGCGTTTATTGTGTCTGTG
TTGCCAATAGTAAAACACACATTTAGACACCCTTTCTAATTATCATCGTA
TTTTTTTTATAGATACAGCCAAAGAGGAAATTGAGAAATTACGAGCGGAA
ATACATAAACTGAAAATCGACAAAATGGATCTCATACGGCAGAACgtggt
gattttttttttataaacgtCAGCATTTTTCAATTTGGTTCAGTTGCTTT
CCTTATTTTAAACCCATTAAGTACCATCACTCCgtaacttcaaatttttg
atttaaaatgcgTGTACACGCCCCAATCAAGGAAAAATCCCCATCTCGAC
TTTTTTTATACGGGcgaagtaaaaaaaacaacaggCACACTGCGCTCTTA
ACTCTAGACCGACCGGTACAGgtccgagaaaaaaaattgagcgATCTCAT
ATTATACCAGTTGCACTTAATGGGTTAATGGAGTATACAGgaaataatgt
tttgatttaaatacGCATGATGTTTGAACACTGAAATAACTGATTGTAGT
TCACTTAAAAAATGTCGACTTTTACAACGAGCAGAGAACGTGAACTAAAA
CAGACAATGTACAGAAATTTTCCTTACAAAACCAATGTTAACTTGACTTG
ACCACTGACGCCGACGCTGACCagtttacagaaaaaaaaacttataaaac
acatcaaaagacaCAATCTGACGAACATACTTTTGCAAAACACAAAACGA
ATTATTCCTAAAAgtgaaaagttcaaaattttgattttattagaAATTGA
AAGAACAAAAAAAGTCACGTCAGCCGAAACAAGCGTGGTCAGGTAAGATA
ACCTTGGTCTTTTATATAATACAACCTCCGGTGCCGGAGGTTTTGTGGAG
AAAGTGCCTAAGAAATTTTGCATGACTTAAAAAATTggcctaaaaattga
aattctaaaaacaaCTAACATGCGTCAATCACTGCCTGCTCAATATAACA
GATTACATAAATGTTTTACGAatctatttttctatttcagATCCATCAAC
GGGAGATTAAGAAATTAAACGATAAAACGCAGACCAACGGTGATTATCGT
TCTCTATCACTCAAACATTCGTATGACCCGAGAAAAATGTACAACGCAAC
TGCTACTACGTTTGCCGAGTTTGTTTGACCACGACTGATGTTGAACACGC
TAGAATGAAAATgatatatttttgtgaaatgacAGATATAGTCATCAGTG
ATGTTAGATTTCTGCATTTTTATCTTTGTTAAACTAGTCCCGATAGCGAT
AGGCCAACcgtctttttcaaaaaatgtcataacatttgaaaaaaaaattt
cagaaatacGCCATTTTGCTGCAACTCTTGGGTTTGATGATAAATTTTGT
TGAGTTATATATCTACCAAATTAATTAGGCTTTTACCTTTCTTTTGTAAA
TATCTTTataattttgctgacatcaacATTTATATTTTCTATTTAGTTTG
TGTATTTATTTGATATAAAAATGATAATATGCTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039855	XLOC_039855	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_394	supercontig	scaffold_394:46196..55730 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.03878e-08	0	0	0	5.30759e-08	0	1.67637e-05	0	1.37875	0.827672	2.21418	4.80278e-10	3.78567	3.3591	2.50195	2.80942	0.115663	5.55914	0.208025	1.36763	1.27233e-05	3.19199	2.5719e-06	0.603541	0.0101311	2.66518e-06	0	0	0	0.396125

Blast

[Close]

BLAST of TCONS_00063586 vs. Swiss-Prot (Human)
Match: RPGP2 (Rap1 GTPase-activating protein 2 OS=Homo sapiens GN=RAP1GAP2 PE=1 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 3.985e-101
Identity = 191/470 (40.64%), Postives = 273/470 (58.09%), Query Frame = 3

Query:   99 ILYEQQNLKLDSISSIMESTKEQKKKEP-IQEVLACGKPYPMVVLPVEGDYWME-----GTYHILSRDMYDRP----IFPTIDRSRCVLDDDQTVYNYRRNFAGKEHTNYVGNDSKHGPVLMSVLLDSSQPVSERPAPSPPSAQMANPPQRPKEQFKVILRLKNKTIEKTISPSHFSSDCPGPREIMKYMLEDDVDVDRFHPVVVPRASEEIMRFDEHSVSNCYKIGVLHQKHGQISEEDYLQNPEETPALREFLDCIADRVDLKDFESYRGGLDVKHGQTGEHSYYTNYKEREVMFHVSSMIPYKPNDSQQLSRKRHIGNDVVSIVFQEENTPFCPNSIRSHFLHCFIVVQVENPNSEETYYKVSVAAKEGVPKFAPSLPNPCIFKRSDELKDFLLTKILNAENAAVKSEKFSALAERTRSMLLQGIVTDFIAKNEKMXXXXXXXXXXXXXXXHHVKSGSFLSTFRSAI 1478
            +L + Q +KL+      +  K+     P I EV+  G PYP V+LP  G YW+E     GT   L   + +      + P     +  L+       YRR+F GK+H N+    S  G +++SV  + ++ +                     E  +VILR K KT+ + I P    S  P   +I K   +D V + RF+PV+ P+AS+ I+ +DEH V+N +K GV++QK  Q  EE+   N EE+PA +EFLD + D + L+DF+ +RGGLDV HGQTG  S YT +++RE+MFHVS+ +P+   D+QQL RKRHIGND+V+I+FQEENTPF P+ I S+FLH +IVVQVE P +E   YKVSV A+E VP F P LP+P +F++  E ++FLLTK+ NAENA  KS+KF+ L +RTR+ LL  +  +  A  + M     L  G +     +   G FL +F+ AI
Sbjct:   62 MLEKMQGIKLEEQKPGPQKNKDDYIPYPSIDEVVEKGGPYPQVILPQFGGYWIEDPENVGTPTSLGSSICEEEEEDNLSPNTFGYK--LECKGEARAYRRHFLGKDHLNFYCTGSSLGNLILSVKCEEAEGI---------------------EYLRVILRSKLKTVHERI-PLAGLSKLPSVPQIAKAFCDDAVGL-RFNPVLYPKASQMIVSYDEHEVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLDLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTTFRDREIMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAM-----LGLGPEEDKFENGGHGGFLESFKRAI 501

The following BLAST results are available for this feature:

BLAST of TCONS_00063586 vs. Swiss-Prot (Human)

BLAST of TCONS_00063586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPGP2	3.985e-101	40.64	Rap1 GTPase-activating protein 2 OS=Homo sapiens G...	[more]

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TCONS_00063586 (transcript) - C. hemisphaerica