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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063584 ID=TCONS_00063584|Name=TCONS_00063584|organism=Clytia hemisphaerica|type=transcript|length=2803bpRun BLAST on NCBI transcript from alignment at scaffold_394:41956..55730+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063584 ID=TCONS_00063584|Name=TCONS_00063584|organism=Clytia hemisphaerica|type=transcript|length=13775bp|location=Sequence derived from alignment at scaffold_394:41956..55730+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00063584 vs. Swiss-Prot (Human)
Match: RPGP2 (Rap1 GTPase-activating protein 2 OS=Homo sapiens GN=RAP1GAP2 PE=1 SV=2) HSP 1 Score: 335.88 bits (860), Expect = 2.638e-101 Identity = 191/471 (40.55%), Postives = 272/471 (57.75%), Query Frame = 1
Query: 166 EFFDAQQNLKLDSISSIMESTKEQKKKEP-IQEVLACGKPYPMVVLPVEGDYWME-----GTYHILSRDMYDRP----IFPTIDRSRCVLDDDQTVYNYRRNFAGKEHTNYVGNDSKHGPVLMSVLLDSSQPVSERPAPSPPSAQMANPPQRPKEQFKVILRLKNKTIEKTISPSHFSSDCPGPREIMKYMLEDDVDVDRFHPVVVPRASEEIMRFDEHSVSNCYKIGVLHQKHGQISEEDYLQNPEETPALREFLDCIADRVDLKDFESYRGGLDVKHGQTGEHSYYTNYKEREVMFHVSSMIPYKPNDSQQLSRKRHIGNDVVSIVFQEENTPFCPNSIRSHFLHCFIVVQVENPNSEETYYKVSVAAKEGVPKFAPSLPNPCIFKRSDELKDFLLTKILNAENAAVKSEKFSALAERTRSMLLQGIVTDFIAKNEKMXXXXXXXXXXXXXXXHHVKSGSFLSTFRSAI 1548
E + Q +KL+ + K+ P I EV+ G PYP V+LP G YW+E GT L + + + P + L+ YRR+F GK+H N+ S G +++SV + ++ + E +VILR K KT+ + I P S P +I K +D V + RF+PV+ P+AS+ I+ +DEH V+N +K GV++QK Q EE+ N EE+PA +EFLD + D + L+DF+ +RGGLDV HGQTG S YT +++RE+MFHVS+ +P+ D+QQL RKRHIGND+V+I+FQEENTPF P+ I S+FLH +IVVQVE P +E YKVSV A+E VP F P LP+P +F++ E ++FLLTK+ NAENA KS+KF+ L +RTR+ LL + + A + M L G + + G FL +F+ AI
Sbjct: 61 EMLEKMQGIKLEEQKPGPQKNKDDYIPYPSIDEVVEKGGPYPQVILPQFGGYWIEDPENVGTPTSLGSSICEEEEEDNLSPNTFGYK--LECKGEARAYRRHFLGKDHLNFYCTGSSLGNLILSVKCEEAEGI---------------------EYLRVILRSKLKTVHERI-PLAGLSKLPSVPQIAKAFCDDAVGL-RFNPVLYPKASQMIVSYDEHEVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLDLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTTFRDREIMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAM-----LGLGPEEDKFENGGHGGFLESFKRAI 501 The following BLAST results are available for this feature:
BLAST of TCONS_00063584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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