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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063566 ID=TCONS_00063566|Name=TCONS_00063566|organism=Clytia hemisphaerica|type=transcript|length=1939bp
TGCTCGGGAATGTTTTAGCCTGTACCTAATCACTCACTCTATTGCTGGTA
GGTTTACTTACAACACCTTACAGGATCTTTCCATTAGCCTCGAACTATAC
TTTTACTTTCGAAAAGAGAGTAAAGAAATACAGGCtacaaaattaatcaa
aaatggTACCGAAAGTAGTGAATTCTTTAATCATGATTAATTTGGATTGA
TCGTTGAATGGATTTTTGGATGGATTTTAACCATCATTGCACTTTTGTAT
GACTTTTACTTTTAAGAGAAATTTACACATGTAATATTCGATCTTTTTAA
AGTAAGATTTTATCATTGAAATTTGGTTTTGTTTTCATACAACATAATAT
AATACAGTAATGATATATGTGGAGATCGGGCGGGGGGATCGGGTAACTTT
TGCATCAGTGGAGACAAACATGcttagccctcaaatgaaagacctggctg
gtcattacaatacaaagtcaaatcaaaacaaaaacggTAGAGTAGTAGAG
CTGCGAgaggagctgcgtagttgtatttttaATAATGACCAGCCAGCCAG
TGCCAGAGGCTGCCAGGTCATTtctttgagggctatgcatcagtgaggct
ggaacttgatttttgaggattacgattttaccagctttttagcaattttt
gcctcgctaacccaaatctcgcaaNACATCAGTGGAGACTAACATGctta
gccctcaaatgaaagacctggctggtcattacaatacaaagtcaaatcaa
aacaaaaacggTAGAgtagtagagctgcgagcggagctgcgtagttgtat
ttttaATAATGACCAGCCAGTGCCAGTGGCTGCCAGGACCAGAGGTCATT
tctttgagggctatgcatgttagcctccactgatgcaaaagttacccaac
ttcacggtatTATTTATACACAGTCACCACAGCCACCCACAGGcactgtg
gtatagtggtcattgacatTGACCTTTGGTTTCTGCTCAGACggctgagg
ttcgattcccccAATTGCATCGGCTCACTTGGCACGCAAGCGACGACTGA
AGCTTTGCATCGCCCAGGTcatcaacccataccatgtgatgTGAGGAAGA
TGTGAGGGGACTTGTGTGTAGTCAGTCCAAAACAAAGTGTTGACGACGTG
TCagagcctcctgcaactcaaccaaaaataaatacaaattagtctagGTG
GAGACTATATTGCCCCTGTCACATCAGTACAACTCTGCTGGGTGccttga
aaatagaaaatttagcactcaactgctctaacttgggaggATTGGtagaa
acatgggactggttaatatctggtctgtattttcacttactgtttatAAA
TCTCTTTTAcagcaaaatttgtttttgtgtattttttaatacgccgttca
ttaactcaaatcaaatgactttggaggttcggtaaaatggtggtcaaatt
gccgtcccatgttttgtctcAGTGCAAGGAACGCTACAAAAGGTCTGATC
ACGGCATCGGCAGACAACAACAGGCGAACTCAAAGCAGCCGCACAGAAAT
GAAGCAAGAAAATAATATTAACAGGCAAAAAACTCAATATTATTTTGTCA
TGTGATCATATTAAAAGAACATGAGTATATTGGCTCATTTTCCTGTGTGT
ATCACATTTTTATAATGTTCAACATGATAAACATGATATTATGTTATATG
AATGATAACATGATTGCTATTGACAGCACTGTTGATTATTGgacattgtt
aaccggttactttttcgaagtgggctacatggctttttgcacaatgcaat
tggttcttttcgcatgacgacgggcctacattgtctagagttgcccgtcg
ttaggaaaattcattgtgacgtcactttttcaaaggaaaatgaacaatgc
gttgacatcatttctctcattttttatttctgacgtcag Run BLAST on NCBI transcript from alignment at scaffold_393:19762..21700 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063566 ID=TCONS_00063566|Name=TCONS_00063566|organism=Clytia hemisphaerica|type=transcript|length=1939bp|location=Sequence derived from alignment at scaffold_393:19762..21700 (Clytia hemisphaerica)
ctgacgtcagaaataaaaaatgagagaaatgatgtcaacgcattgttcat
tttcctttgaaaaagtgacgtcacaatgaattttcctaacgacgggcaac
tctagacaatgtaggcccgtcgtcatgcgaaaagaaccaattgcattgtg
caaaaagccatgtagcccacttcgaaaaagtaaccggttaacaatgtcCA
ATAATCAACAGTGCTGTCAATAGCAATCATGTTATCATTCATATAACATA
ATATCATGTTTATCATGTTGAACATTATAAAAATGTGATACACACAGGAA
AATGAGCCAATATACTCATGTTCTTTTAATATGATCACATGACAAAATAA
TATTGAGTTTTTTGCCTGTTAATATTATTTTCTTGCTTCATTTCTGTGCG
GCTGCTTTGAGTTCGCCTGTTGTTGTCTGCCGATGCCGTGATCAGACCTT
TTGTAGCGTTCCTTGCACTgagacaaaacatgggacggcaatttgaccac
cattttaccgaacctccaaagtcatttgatttgagttaatgaacggcgta
ttaaaaaatacacaaaaacaaattttgctgTAAAAGAGATTTataaacag
taagtgaaaatacagaccagatattaaccagtcccatgtttctaCCAATc
ctcccaagttagagcagttgagtgctaaattttctattttcaaggCACCC
AGCAGAGTTGTACTGATGTGACAGGGGCAATATAGTCTCCACctagacta
atttgtatttatttttggttgagttgcaggaggctctGACACGTCGTCAA
CACTTTGTTTTGGACTGACTACACACAAGTCCCCTCACATCTTCCTCAca
tcacatggtatgggttgatgACCTGGGCGATGCAAAGCTTCAGTCGTCGC
TTGCGTGCCAAGTGAGCCGATGCAATTgggggaatcgaacctcagccGTC
TGAGCAGAAACCAAAGGTCAatgtcaatgaccactataccacagtgCCTG
TGGGTGGCTGTGGTGACTGTGTATAAATAataccgtgaagttgggtaact
tttgcatcagtggaggctaacatgcatagccctcaaagaAATGACCTCTG
GTCCTGGCAGCCACTGGCACTGGCTGGTCATTATtaaaaatacaactacg
cagctccgctcgcagctctactacTCTAccgtttttgttttgatttgact
ttgtattgtaatgaccagccaggtctttcatttgagggctaagCATGTTA
GTCTCCACTGATGTNttgcgagatttgggttagcgaggcaaaaattgcta
aaaagctggtaaaatcgtaatcctcaaaaatcaagttccagcctcactga
tgcatagccctcaaagaAATGACCTGGCAGCCTCTGGCACTGGCTGGCTG
GTCATTATtaaaaatacaactacgcagctcctcTCGCAGCTCTACTACTC
TAccgtttttgttttgatttgactttgtattgtaatgaccagccaggtct
ttcatttgagggctaagCATGTTTGTCTCCACTGATGCAAAAGTTACCCG
ATCCCCCCGCCCGATCTCCACATATATCATTACTGTATTATATTATGTTG
TATGAAAACAAAACCAAATTTCAATGATAAAATCTTACTTTAAAAAGATC
GAATATTACATGTGTAAATTTCTCTTAAAAGTAAAAGTCATACAAAAGTG
CAATGATGGTTAAAATCCATCCAAAAATCCATTCAACGATCAATCCAAAT
TAATCATGATTAAAGAATTCACTACTTTCGGTAccatttttgattaattt
tgtaGCCTGTATTTCTTTACTCTCTTTTCGAAAGTAAAAGTATAGTTCGA
GGCTAATGGAAAGATCCTGTAAGGTGTTGTAAGTAAACCTACCAGCAATA
GAGTGAGTGATTAGGTACAGGCTAAAACATTCCCGAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063566-exon-scaffold_393-1491911889:19762..21700 | TCONS_00063566-exon-scaffold_393-1491911889:19762..21700 | Clytia hemisphaerica | exon |
| TCONS_00063566-exon-scaffold_393-1510915933:19762..21700 | TCONS_00063566-exon-scaffold_393-1510915933:19762..21700 | Clytia hemisphaerica | exon |
| TCONS_00063566-exon-scaffold_393-1575043694:19762..21700 | TCONS_00063566-exon-scaffold_393-1575043694:19762..21700 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_393 | supercontig | scaffold_393:19762..21700 . |
Blast
The following BLAST results are available for this feature:
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