TCONS_00063553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063553
Unique NameTCONS_00063553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063553 ID=TCONS_00063553|Name=TCONS_00063553|organism=Clytia hemisphaerica|type=transcript|length=283bp
CAAAAATTCATGCATAAAAAAGACTAATAACAGTAGAAATAATTGTTCTC
CACcatgaaaataaatctcataaaaacaatCTGAGTGAAATTTCATCAGC
CATCTTATAGCTGTTTGCACTGTTTGCACTCAGTTCGAACAAAAAACGCA
AACGGAAAATCTCAAAATCCCGCTGACCTCTCTCAGAGGTCAGTCAGGCA
AAATCGTTTGAGTGAAGATgcgccaaattggtatcgtccgtttcttcgaa
actctcccgccgaattttttccgtataccgcca
Run BLAST on NCBI

transcript from alignment at scaffold_392:256865..257147

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063553 ID=TCONS_00063553|Name=TCONS_00063553|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at scaffold_392:256865..257147 (Clytia hemisphaerica)
tggcggtatacggaaaaaattcggcgggagagtttcgaagaaacggacga
taccaatttggcgcATCTTCACTCAAACGATTTTGCCTGACTGACCTCTG
AGAGAGGTCAGCGGGATTTTGAGATTTTCCGTTTGCGTTTTTTGTTCGAA
CTGAGTGCAAACAGTGCAAACAGCTATAAGATGGCTGATGAAATTTCACT
CAGattgtttttatgagatttattttcatgGTGGAGAACAATTATTTCTA
CTGTTATTAGTCTTTTTTATGCATGAATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039842XLOC_039842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063553-exon-scaffold_392-1491911889:256865..257147TCONS_00063553-exon-scaffold_392-1491911889:256865..257147Clytia hemisphaericaexon
TCONS_00063553-exon-scaffold_392-1510915933:256865..257147TCONS_00063553-exon-scaffold_392-1510915933:256865..257147Clytia hemisphaericaexon
TCONS_00063553-exon-scaffold_392-1575043694:256865..257147TCONS_00063553-exon-scaffold_392-1575043694:256865..257147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_392supercontigscaffold_392:256865..257147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29304	1.84875	0.252923	0	0.62789	1.92141	0	2.43845	2.16296	1.60721	1.11963	1.4493	1.78899	4.58996	0.0438708	3.5179	0	0	1.17064	2.28409	0.780071	0	0.776025	0.699418	0	2.0722	1.45246	5.44967	0.744615	1.22058
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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