TCONS_00063545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063545
Unique NameTCONS_00063545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063545 ID=TCONS_00063545|Name=TCONS_00063545|organism=Clytia hemisphaerica|type=transcript|length=784bp
caaaatcaaattttttttctaaaaatcgtgatttttcccacccttagaga
gactactttgaaatttcctgatttttgtaacccttagagagactttgaaa
ggtgaaaaatccgacccttaccgtccgcacatacccagcacctatttttg
cctaagtacccctagagacttgaaatttcacaaaatgtacttatatttgt
cctctaaaggataaaagaaaaagaaagcatttcttctcagttaatttctt
aaaatttggctaaaacaaggaaatttgaatccgattaatccagTCAAAGA
TCGCCGTGGAGGGTCTTGATGTCGACGGGAAGGTTTCTCTTATGACTGAA
ACTATAATCAATATCATGTCAGATTTCGTGCCAAATAAGGTCATAACCGT
CAGGAACAAGGATGCAGTATGGATGACGGCTGGGATAAAGAGAGCCCTGc
ttaaaaaatctaaagtttATAAGCGGTATGTCAAAAATGGGAGGAGGGTA
GAAGATCTTGAAACCCTCCATGAACATCAGTCTAGGTGTAGAAGGGCAGT
CAGAGatgcaaaaaattcttatttttctcgTTTAGCAATTAGTGATCCAA
ATCTGGGAACGAAAAAATACTGGtccattttaaataaatttcttcATAAG
AGGAAGACGCCAAGGATTCCCCCTGTTGGAGACTCCAGCAATAATCTCAT
TGCTGATGttccaacaaaaacaaatatgTTTAACAAATTTTTTGCTAATC
AGTGCTCTCTCATAGACACTGATAGTGTTTTGCC
Run BLAST on NCBI

protein sequence of TCONS_00063545-protein

>TCONS_00063545-protein ID=TCONS_00063545-protein|Name=TCONS_00063545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MTETIINIMSDFVPNKVITVRNKDAVWMTAGIKRALLKKSKVYKRYVKNG
RRVEDLETLHEHQSRCRRAVRDAKNSYFSRLAISDPNLGTKKYWSILNKF
LHKRKTPRIPPVGDSSNNLIADVPTKTNMFNKFFANQCSLIDTDSVL
Run BLAST on NCBI

transcript from alignment at scaffold_392:135959..136742

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063545 ID=TCONS_00063545|Name=TCONS_00063545|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at scaffold_392:135959..136742 (Clytia hemisphaerica)
GGCAAAACACTATCAGTGTCTATGAGAGAGCACTGATTAGCAAAAAATTT
GTTAAAcatatttgtttttgttggaaCATCAGCAATGAGATTATTGCTGG
AGTCTCCAACAGGGGGAATCCTTGGCGTCTTCCTCTTATgaagaaattta
tttaaaatggaCCAGTATTTTTTCGTTCCCAGATTTGGATCACTAATTGC
TAAAcgagaaaaataagaattttttgcatCTCTGACTGCCCTTCTACACC
TAGACTGATGTTCATGGAGGGTTTCAAGATCTTCTACCCTCCTCCCATTT
TTGACATACCGCTTATaaactttagattttttaagCAGGGCTCTCTTTAT
CCCAGCCGTCATCCATACTGCATCCTTGTTCCTGACGGTTATGACCTTAT
TTGGCACGAAATCTGACATGATATTGATTATAGTTTCAGTCATAAGAGAA
ACCTTCCCGTCGACATCAAGACCCTCCACGGCGATCTTTGActggattaa
tcggattcaaatttccttgttttagccaaattttaagaaattaactgaga
agaaatgctttctttttcttttatcctttagaggacaaatataagtacat
tttgtgaaatttcaagtctctaggggtacttaggcaaaaataggtgctgg
gtatgtgcggacggtaagggtcggatttttcacctttcaaagtctctcta
agggttacaaaaatcaggaaatttcaaagtagtctctctaagggtgggaa
aaatcacgatttttagaaaaaaaatttgattttg

Coding sequence (CDS) from alignment at scaffold_392:135959..136742

>TCONS_00063545 ID=TCONS_00063545|Name=TCONS_00063545|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_392:135959..136742 (Clytia hemisphaerica)
CAAAACACTATCAGTGTCTATGAGAGAGCACTGATTAGCAAAAAATTTGT
TAAAcatatttgtttttgttggaaCATCAGCAATGAGATTATTGCTGGAG
TCTCCAACAGGGGGAATCCTTGGCGTCTTCCTCTTATgaagaaatttatt
taaaatggaCCAGTATTTTTTCGTTCCCAGATTTGGATCACTAATTGCTA
AAcgagaaaaataagaattttttgcatCTCTGACTGCCCTTCTACACCTA
GACTGATGTTCATGGAGGGTTTCAAGATCTTCTACCCTCCTCCCATTTTT
GACATACCGCTTATaaactttagattttttaagCAGGGCTCTCTTTATCC
CAGCCGTCATCCATACTGCATCCTTGTTCCTGACGGTTATGACCTTATTT
GGCACGAAATCTGACATGATATTGATTATAGTTTCAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039834XLOC_039834Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063545-proteinTCONS_00063545-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063545-exon-scaffold_392-1491911889:135959..136742TCONS_00063545-exon-scaffold_392-1491911889:135959..136742Clytia hemisphaericaexon
TCONS_00063545-exon-scaffold_392-1510915933:135959..136742TCONS_00063545-exon-scaffold_392-1510915933:135959..136742Clytia hemisphaericaexon
TCONS_00063545-exon-scaffold_392-1575043694:135959..136742TCONS_00063545-exon-scaffold_392-1575043694:135959..136742Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_392supercontigscaffold_392:135959..136742 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03625	1.1457	1.16693	0.983197	1.51764	0.750936	1.91065	1.96688	1.92635	1.51859	2.45473	1.85191	1.78085	1.216	1.52023	1.55574	1.30658	1.4049	1.60625	2.25128	2.29002	3.42356	1.48455	1.23631	1.19155	0.89562	3.44425	3.26237	2.8382	1.45578
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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