|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063544 ID=TCONS_00063544|Name=TCONS_00063544|organism=Clytia hemisphaerica|type=transcript|length=1323bp
aaactcATCTCACGTTTTGTTGATGAAATCTGAACAGTCATTTAATCGCT
CTCTTGCTTTTCAACATTTGAACACGTTAAGCCTattagcttgaaatttt
cagtgtgAAACCACCCTCAATTATTGTTATGGAATGCAATCATTTGATTG
ACAAAAGATTTACTCGTCAAAATGATGGAGTGCGCCATCAATCTCGTGAG
CAGTTGTTAGATTACACTCCTCCTTTGCATAAAGATGTTTTGTGGTAAAT
GTAACGGGATATTTTTTTGGCATTGAAGTGCTATTTCAATTTATTGATCA
TTTCAAGTACGTTAAGGTGCTCTTCAACTAGGGCTGCTTGTTACACTTGT
GAATGCATCAGTATAGAGTTGTTGTGCTTGCTGTATTGCGGTAGTTTGTT
AGTTGGTCATATGAAATCGTATGTTAGAAGAGGGATGACTGTTGCATTTC
TATCAGATAACAATTAGTGTCTCGATCTTAAAGCTTATAAAGCTTATAAA
TCCCAAATTGTGCTAGTAGTATCAATAGTATTAGGacttaccttattggt
atatattttcgcgtgttacaaattttcgcgggtacttaatttcgcgagtt
ttttggNGTAAAAAACAGCAAAAGTATttagtctacttctgactgaactt
tgctttttgatgactTTGATAGCGCTGAAGTTCAGTGAGGAAGACTAGag
gattttggaatttttcacaaaaatttcaaacaataaattttattttgaaa
tcccTCATAGTtttaattttcccatttttccaGCCATTACAGGGACTGCC
AGACTCCCAAAATGCActcttaagggtggcacatacccgtaccttCACTT
GCCTAAGTGAAATGACTTTCTTGACCTCGCTGATGAATCTCGCTAAAACC
GAAAATTGCAGAACTTTTTAGTTGAGCCTTTAAAAATTATGCAGATTTGA
ATGCTATCTAGTTAGAATATTGTGTTTTGTACTCGAGATATTTGGATGTG
GAACATGCACTATTACATTTTTATCTCAGTAAGATGGCAGGTAGATTGTA
TCGCTCTTAGAAACAAGCGCGTAAACGATCGATGCGTTGGATAAAAGATG
AATAGAACAGTGATGGAGTAGAGCTCTTCTAGATAATCTTTGCAGTTTTA
ACGACAACACTTTTTATAATTTATACGTTTTAAGTATTAAATTGTTACtg
tataaaatttaaaaaactaagaaatttcaaagatttataaatttatgttt
tttatgTATTAATTGTTGTATTAGCattctaaaagttaaagaatttTACT
TTGCAGATTAAATTATACCACGG Run BLAST on NCBI transcript from alignment at scaffold_392:62077..63399 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063544 ID=TCONS_00063544|Name=TCONS_00063544|organism=Clytia hemisphaerica|type=transcript|length=1323bp|location=Sequence derived from alignment at scaffold_392:62077..63399 (Clytia hemisphaerica)
CCGTGGTATAATTTAATCTGCAAAGTAaaattctttaacttttagaatGC
TAATACAACAATTAATAcataaaaaacataaatttataaatctttgaaat
ttcttagttttttaaattttatacaGTAACAATTTAATACTTAAAACGTA
TAAATTATAAAAAGTGTTGTCGTTAAAACTGCAAAGATTATCTAGAAGAG
CTCTACTCCATCACTGTTCTATTCATCTTTTATCCAACGCATCGATCGTT
TACGCGCTTGTTTCTAAGAGCGATACAATCTACCTGCCATCTTACTGAGA
TAAAAATGTAATAGTGCATGTTCCACATCCAAATATCTCGAGTACAAAAC
ACAATATTCTAACTAGATAGCATTCAAATCTGCATAATTTTTAAAGGCTC
AACTAAAAAGTTCTGCAATTTTCGGTTTTAGCGAGATTCATCAGCGAGGT
CAAGAAAGTCATTTCACTTAGGCAAGTGaaggtacgggtatgtgccaccc
ttaagagTGCATTTTGGGAGTCTGGCAGTCCCTGTAATGGCtggaaaaat
gggaaaattaaaACTATGAgggatttcaaaataaaatttattgtttgaaa
tttttgtgaaaaattccaaaatcctCTAGTCTTCCTCACTGAACTTCAGC
GCTATCAAagtcatcaaaaagcaaagttcagtcagaagtagactaaATAC
TTTTGCTGTTTTTTACNccaaaaaactcgcgaaattaagtacccgcgaaa
atttgtaacacgcgaaaatatataccaataaggtaagtCCTAATACTATT
GATACTACTAGCACAATTTGGGATTTATAAGCTTTATAAGCTTTAAGATC
GAGACACTAATTGTTATCTGATAGAAATGCAACAGTCATCCCTCTTCTAA
CATACGATTTCATATGACCAACTAACAAACTACCGCAATACAGCAAGCAC
AACAACTCTATACTGATGCATTCACAAGTGTAACAAGCAGCCCTAGTTGA
AGAGCACCTTAACGTACTTGAAATGATCAATAAATTGAAATAGCACTTCA
ATGCCAAAAAAATATCCCGTTACATTTACCACAAAACATCTTTATGCAAA
GGAGGAGTGTAATCTAACAACTGCTCACGAGATTGATGGCGCACTCCATC
ATTTTGACGAGTAAATCTTTTGTCAATCAAATGATTGCATTCCATAACAA
TAATTGAGGGTGGTTTcacactgaaaatttcaagctaatAGGCTTAACGT
GTTCAAATGTTGAAAAGCAAGAGAGCGATTAAATGACTGTTCAGATTTCA
TCAACAAAACGTGAGATgagttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063544-exon-scaffold_392-1491911889:62077..63399 | TCONS_00063544-exon-scaffold_392-1491911889:62077..63399 | Clytia hemisphaerica | exon |
| TCONS_00063544-exon-scaffold_392-1510915933:62077..63399 | TCONS_00063544-exon-scaffold_392-1510915933:62077..63399 | Clytia hemisphaerica | exon |
| TCONS_00063544-exon-scaffold_392-1575043694:62077..63399 | TCONS_00063544-exon-scaffold_392-1575043694:62077..63399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_392 | supercontig | scaffold_392:62077..63399 . |
Blast
The following BLAST results are available for this feature:
|
