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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063543 ID=TCONS_00063543|Name=TCONS_00063543|organism=Clytia hemisphaerica|type=transcript|length=1218bp
CGTAACTTGGCTTTTAAATGTTCATTTTCCCCACTGTGTAAGGAAAAGGT
GATTTTTCACCGGACTCCAATTAGGCAATCCATTCTTCGactgtaaaatt
atttttgtatgaTAAACTAAAGATTCTGCTTCGTTTTAATTTTTGCAGCA
TTTGGAAGAATTTAATTTCACAcatgttattaaaagaaaagtGGGATGGA
GACACGAGaggcgtttcaggttggtgagatggagcatgttgtatcgcacc
aacgcgaaaaaaacttctcgtgtccccaagccttaagttttgcagaattt
tctaatattttaaaatgaagaagaaaatgtaaAGATTGTTGTTACtgtat
atttttctgaaatttgaaacacccctgtctctctgTCCCAGTCGGTATTG
AGCACATCCCAGTGGGATGGGAAtttgaaaatctgaaattcactggggtt
taaaatattttttagaatattGAGGGGTGTAAAAATATCTATGATTTTTG
CAGGtccgagaaaaattttgacaactttttATATTAGTTTGATTTAGTGC
TATTCAGAAATTGATTCTTATGTGTCACTAAAGTAGTTTGAAAATCAACC
CCAAAAACGTGGGAATTACCGTAGAAGTAGAGTTTGTTGCAGGCGATATA
TAGTATTGAAACATTTTGATAGCGAATGAAGAGAGGGattttttctccct
ttttttGGGTATTTAAATTATTGATTCTAGTGGAATGGAAGGAGAAGATT
CAGAAGATACGGGAGTAAACTCAGAACATATTGAGTGGTTTATGTgtgat
tttttatcattttcaatcatTTCTTAACTACACTTTTTcagtggggtgag
tgatttttccagtggggtggaaaaatgggcaattttcgGAAGAATTTATC
ACTGGGGTGGATCCTACTGGCTcacagaggcaggggtgtttTGAATCCTC
TATTTGTAAATATATATCCAGCAGAccttttatattatttttgtgTCAAA
AATCACAACACTCCAAAAAAGGTCCAAATGGGCGAAATtgctaaaagaaa
acaaaatgggCCTACTATAACATAACTTTAGACCcaaaagaagaatgaaa
aatcCGAATACATGTGAAATCACTCaaagtttcagaaaaatatGACATCA
GTTTTTGATCGAgtgaaaaatttcttcattcTTATCCTTCATTCACCAcg
ttcattttcaatttttta Run BLAST on NCBI transcript from alignment at scaffold_392:48726..49943 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063543 ID=TCONS_00063543|Name=TCONS_00063543|organism=Clytia hemisphaerica|type=transcript|length=1218bp|location=Sequence derived from alignment at scaffold_392:48726..49943 (Clytia hemisphaerica)
taaaaaattgaaaatgaacgTGGTGAATGAAGGATAAgaatgaagaaatt
tttcacTCGATCAAAAACTGATGTCatatttttctgaaactttGAGTGAT
TTCACATGTATTCGgatttttcattcttcttttgGGTCTAAAGTTATGTT
ATAGTAGGcccattttgttttcttttagcaATTTCGCCCATTTGGACCTT
TTTTGGAGTGTTGTGATTTTTGAcacaaaaataatataaaaggTCTGCTG
GATATATATTTACAAATAGAGGATTCAaaacacccctgcctctgtgAGCC
AGTAGGATCCACCCCAGTGATAAATTCTTCcgaaaattgcccatttttcc
accccactggaaaaatcactcaccccactgAAAAAGTGTAGTTAAGAAat
gattgaaaatgataaaaaatcacACATAAACCACTCAATATGTTCTGAGT
TTACTCCCGTATCTTCTGAATCTTCTCCTTCCATTCCACTAGAATCAATA
ATTTAAATACCCaaaaaaagggagaaaaaatCCCTCTCTTCATTCGCTAT
CAAAATGTTTCAATACTATATATCGCCTGCAACAAACTCTACTTCTACGG
TAATTCCCACGTTTTTGGGGTTGATTTTCAAACTACTTTAGTGACACATA
AGAATCAATTTCTGAATAGCACTAAATCAAACTAATATaaaaagttgtca
aaatttttctcggaCCTGCAAAAATCATAGATATTTTTACACCCCTCaat
attctaaaaaatattttaaaccccagtgaatttcagattttcaaaTTCCC
ATCCCACTGGGATGTGCTCAATACCGACTGGGAcagagagacaggggtgt
ttcaaatttcagaaaaatatacaGTAACAACAATCTttacattttcttct
tcattttaaaatattagaaaattctgcaaaacttaaggcttggggacacg
agaagtttttttcgcgttggtgcgatacaacatgctccatctcaccaacc
tgaaacgcctCTCGTGTCTCCATCCCacttttcttttaataacatgTGTG
AAATTAAATTCTTCCAAATGCTGCAAAAATTAAAACGAAGCAGAATCTTT
AGTTTAtcatacaaaaataattttacagtCGAAGAATGGATTGCCTAATT
GGAGTCCGGTGAAAAATCACCTTTTCCTTACACAGTGGGGAAAATGAACA
TTTAAAAGCCAAGTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063543-exon-scaffold_392-1491911889:48726..49943 | TCONS_00063543-exon-scaffold_392-1491911889:48726..49943 | Clytia hemisphaerica | exon |
| TCONS_00063543-exon-scaffold_392-1510915933:48726..49943 | TCONS_00063543-exon-scaffold_392-1510915933:48726..49943 | Clytia hemisphaerica | exon |
| TCONS_00063543-exon-scaffold_392-1575043694:48726..49943 | TCONS_00063543-exon-scaffold_392-1575043694:48726..49943 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_392 | supercontig | scaffold_392:48726..49943 . |
Blast
The following BLAST results are available for this feature:
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