|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063536 ID=TCONS_00063536|Name=TCONS_00063536|organism=Clytia hemisphaerica|type=transcript|length=2446bp
ACAACTACAACTCCAACTACATAAAAATTGGATAAAACTTTATCTGTCCG
CATTAATATGAGgacaaaaaaaatcagataAGTTAGTtataatttaagaa
aaaaatatctttaatcTTTAAACTCAATTTTGACAGCAATTTTTATGGTG
CAAATTATAATCAGAGAAAAATTGGAATAATTGTCCTATTAGAGAAAATC
GGAAACAGGTGTAgagaaatacacgcttttttatataagaatggtgtaaa
tccatttcatcatggatattcttaacttttttgggaaattcatcctaaaa
tattcttacatatcattcttaggttaggatctaGTACTAGATTtgcatac
gtctcaagcataaaatggcatttttgtgaaatgatGCTTTACTTgagggt
aattgacaatttataattgaaaacgCTCTAAAGTGGCATTCTTAGCATTA
TAGCCAAATTCCATGAaagtgatattcttagcattattctaaatttcttg
gtcattttcatcatggacactcttataaaaaaaagcgtgtactcgTATTA
CAGAACTTGTCTAGGTAATTATTTATCCGCAATAAAATCTCGGTGAAAAG
CTGGGTTTTATTATAAGGGATATAAGCAAAACTATGAATATCTTATAGAG
CTTTGCAATTGCCACTCGTTTTGTTTGATTGATAATTTCCTTGCGAATTA
CGTAGAATCGAATCAATTCGAAATCCTGTTTTATGATTTGATTACAAATG
TAGCTTTTTATTCTGCATGATGTCTCATAACTATTAGTTGAAATCGTTTT
TAAAAACAGGCGGTCTACATACAGTTTTCGATCAGAATGTAcataatgtt
attgtttttgtttttgcacAGTTTGATAAAAGAGCATCCGAAGATTGTGC
TACCAGTTGCCAACAGTATGATTCAAAAATTATCTTCCTTCGTTCGAAAT
ATTGATTTTGCTTTGGATTGGACCATGCTTGAGGCTGGAAAACCTTTGTA
TAGGTATGCCTTTTTTTCCCTccttcgaattaaatttttgaatttcataa
tctttttgatttggaaaaagttttcattaGGGGTAAAATGGATATAGATA
TTGCACCTCCAGATCACAGGAATGGGTCCTTCTCCTTTCAAAGCAGGAAT
TCCTCTCCTTCTAGTTGGAATTCATAGTGCTACTCCAAACTTTTCTGATA
CAATGTACGAGGCACACAAGTATCTTGATGTGTGATGATCACACTCGAGC
AGAGAGAGTGGGAGTAAGCACCTGTAAGCTTGTACAGAAGAAATTCAATC
ACATTACAATGTCTGACAATGTCAAATGCTCTTGCATCAGAGTTATGTTA
CTCTATTCTACTCACATGCTAtcggttgacccgggcgaaggtatatACTC
AGCAACCGTAGTGCAGTAGTAGAGCTTCCGGCTATGGtacgcaaggttgt
gggttcaccCCCAGATGCCAGAGATTcctaaaatggtacttgatgcccat
agtgtcctcccctgGGTTTTGAGGCCGAAAGGACGTATGGGGgtaaagaa
ttatttttcaagcCAAGGTGGGAAAAACGAGGGGGGATAGAATATTTTGA
TTGTAGGCATCGGGGgactcaccaaaatcaattcaaaattgaaaaaatct
gaGATGTTGTTGTGATCgatttgttattattttagtggtatttttACTAT
CACCGTTTcggcatagtcattataaagaACTCTGGTCTGGTAATGTAATG
TTTAAGCTTTATTGTCaacttttcttttgttgtaaataaaaggcaagttg
cgatttgcatactttttgatcacgttaccattTTCGACTCTTGGGATTGG
TTAATTTaataatcacatgatcaaaaagtatgcaaaacaagTCGATTTGC
GAACGCAAGCTCtaacaaaaagaaacaaaagccttccagaccggggtttt
ttataatgactatggtttcGGTGTATAGCATATgcttgttttttctttca
tttatttcaaccaGCTAAATTATTACGGTTTAACTCTTTAAGTGCCAATG
ACGAGTATATTGgtcatgggctatgtaggaggatgaagccctcctgtaat
gcccagtttgagttagaaatcgtcatttttggtatAACTGGCACGAATTG
GAATCTCAAAactgagtcttttcagcgagattttaagctaaaaagtcgaa
aaaatgcaaaaatttgacaaaaatccacacaagattttgaccgttttttg
accgtTTTTGTTCAAgaagtgatccaagaacctcaaaatttgaagtcaat
agcattttccAATCACTAGATACAGTATCTCTTGGGTGTTTTAGGCAAAC
AGGGCATTTTTgggctggtctgtaaaatacatgaTACCAGCAGGTTGCAA
AAGATTTGCCCTCTGCCCTTAAAATACACGTGGAGTTGCCTcacaa Run BLAST on NCBI transcript from alignment at scaffold_392:104596..107041- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063536 ID=TCONS_00063536|Name=TCONS_00063536|organism=Clytia hemisphaerica|type=transcript|length=2446bp|location=Sequence derived from alignment at scaffold_392:104596..107041- (Clytia hemisphaerica)
ACAACTACAACTCCAACTACATAAAAATTGGATAAAACTTTATCTGTCCG
CATTAATATGAGGACAAAAAAAATCAGATAAGTTAGTTATAATTTAAGAA
AAAAATATCTTTAATCTTTAAACTCAATTTTGACAGCAATTTTTATGGTG
CAAATTATAATCAGAGAAAAATTGGAATAATTGTCCTATTAGAGAAAATC
GGAAACAGGTGTAGAGAAATACACGCTTTTTTATATAAGAATGGTGTAAA
TCCATTTCATCATGGATATTCTTAACTTTTTTGGGAAATTCATCCTAAAA
TATTCTTACATATCATTCTTAGGTTAGGATCTAGTACTAGATTTGCATAC
GTCTCAAGCATAAAATGGCATTTTTGTGAAATGATGCTTTACTTGAGGGT
AATTGACAATTTATAATTGAAAACGCTCTAAAGTGGCATTCTTAGCATTA
TAGCCAAATTCCATGAAAGTGATATTCTTAGCATTATTCTAAATTTCTTG
GTCATTTTCATCATGGACACTCTTATAAAAAAAAGCGTGTACTCGTATTA
CAGAACTTGTCTAGGTAATTATTTATCCGCAATAAAATCTCGGTGAAAAG
CTGGGTTTTATTATAAGGGATATAAGCAAAACTATGAATATCTTATAGAG
CTTTGCAATTGCCACTCGTTTTGTTTGATTGATAATTTCCTTGCGAATTA
CGTAGAATCGAATCAATTCGAAATCCTGTTTTATGATTTGATTACAAATG
TAGCTTTTTATTCTGCATGATGTCTCATAACTATTAGTTGAAATCGTTTT
TAAAAACAGGCGGTCTACATACAGTTTTCGATCAGAATGTACATAATGTT
ATTGTTTTTGTTTTTGCACAGTTTGATAAAAGAGCATCCGAAGATTGTGC
TACCAGTTGCCAACAGTATGATTCAAAAATTATCTTCCTTCGTTCGAAAT
ATTGATTTTGCTTTGGATTGGACCATGCTTGAGGCTGGAAAACCTTTGTA
TAGGTATGCCTTTTTTTCCCTCCTTCGAATTAAATTTTTGAATTTCATAA
TCTTTTTGATTTGGAAAAAGTTTTCATTAGGGGTAAAATGGATATAGATA
TTGCACCTCCAGATCACAGGAATGGGTCCTTCTCCTTTCAAAGCAGGAAT
TCCTCTCCTTCTAGTTGGAATTCATAGTGCTACTCCAAACTTTTCTGATA
CAATGTACGAGGCACACAAGTATCTTGATGTGTGATGATCACACTCGAGC
AGAGAGAGTGGGAGTAAGCACCTGTAAGCTTGTACAGAAGAAATTCAATC
ACATTACAATGTCTGACAATGTCAAATGCTCTTGCATCAGAGTTATGTTA
CTCTATTCTACTCACATGCTATCGGTTGACCCGGGCGAAGGTATATACTC
AGCAACCGTAGTGCAGTAGTAGAGCTTCCGGCTATGGTACGCAAGGTTGT
GGGTTCACCCCCAGATGCCAGAGATTCCTAAAATGGTACTTGATGCCCAT
AGTGTCCTCCCCTGGGTTTTGAGGCCGAAAGGACGTATGGGGGTAAAGAA
TTATTTTTCAAGCCAAGGTGGGAAAAACGAGGGGGGATAGAATATTTTGA
TTGTAGGCATCGGGGGACTCACCAAAATCAATTCAAAATTGAAAAAATCT
GAGATGTTGTTGTGATCGATTTGTTATTATTTTAGTGGTATTTTTACTAT
CACCGTTTCGGCATAGTCATTATAAAGAACTCTGGTCTGGTAATGTAATG
TTTAAGCTTTATTGTCAACTTTTCTTTTGTTGTAAATAAAAGGCAAGTTG
CGATTTGCATACTTTTTGATCACGTTACCATTTTCGACTCTTGGGATTGG
TTAATTTAATAATCACATGATCAAAAAGTATGCAAAACAAGTCGATTTGC
GAACGCAAGCTCTAACAAAAAGAAACAAAAGCCTTCCAGACCGGGGTTTT
TTATAATGACTATGGTTTCGGTGTATAGCATATGCTTGTTTTTTCTTTCA
TTTATTTCAACCAGCTAAATTATTACGGTTTAACTCTTTAAGTGCCAATG
ACGAGTATATTGGTCATGGGCTATGTAGGAGGATGAAGCCCTCCTGTAAT
GCCCAGTTTGAGTTAGAAATCGTCATTTTTGGTATAACTGGCACGAATTG
GAATCTCAAAACTGAGTCTTTTCAGCGAGATTTTAAGCTAAAAAGTCGAA
AAAATGCAAAAATTTGACAAAAATCCACACAAGATTTTGACCGTTTTTTG
ACCGTTTTTGTTCAAGAAGTGATCCAAGAACCTCAAAATTTGAAGTCAAT
AGCATTTTCCAATCACTAGATACAGTATCTCTTGGGTGTTTTAGGCAAAC
AGGGCATTTTTGGGCTGGTCTGTAAAATACATGATACCAGCAGGTTGCAA
AAGATTTGCCCTCTGCCCTTAAAATACACGTGGAGTTGCCTCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063536-exon-scaffold_392-1575043694:104596..107041 | TCONS_00063536-exon-scaffold_392-1575043694:104596..107041 | Clytia hemisphaerica | exon |
| TCONS_00063536-exon-scaffold_392-1510915933:104596..107041 | TCONS_00063536-exon-scaffold_392-1510915933:104596..107041 | Clytia hemisphaerica | exon |
| TCONS_00063536-exon-scaffold_392-1491911889:104596..107041 | TCONS_00063536-exon-scaffold_392-1491911889:104596..107041 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_392 | supercontig | scaffold_392:104596..107041 - |
Blast
The following BLAST results are available for this feature:
|
