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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063527 ID=TCONS_00063527|Name=TCONS_00063527|organism=Clytia hemisphaerica|type=transcript|length=1901bp
gaattccaagggggtaatgattgaaaatttgtaaaaattcggaattccag
aggggtatgatcctaaaattgcctgaaATTCCCAGGGGGTAGGTcgcaaa
aggttggacctcctcaacaggcggcgcacggtttttttctggaaaaccca
ttttttgaatttggaaattttctgtCCTAGCCCGATTTGGGTAAGGCCTA
AATCTTAGGGAAGGGATCAATTTTTAACATTGGACTTTACTAATAAAcgc
ttcttttaaacgccccctcgaataaccaatttcaggttattttatttttc
gttGTGAATCCCAATACAATGAGTGATAAAATGAAATGACATTAGACCAC
AAAATAATTGAATAGCTTGAGCTGATCAATAAAAATACGAAACATATTTa
aatatgaacatttttaaaGAGCAAAGGTCTTATCTACTGTCTCTAATATC
AGACATAGAAAGTGTTATATTATTCCTTACAATACATTGTACATTTCTCA
TTTCTTTCACAATGTAATTTAATCTAATCTTATTTATCACGAAGGATGGT
atcttttaacaaaaaagaGTAGAAACTGGCTGATATCATTTGCTATTCAC
TCCAGTGCAAGCTAGAAAGACGGGTCGACACGGTACACGAGAATAtcaaa
aaagcatcaaaatgaaaatccaccTGAAACGTAGTATTTTAATCATCTTC
TTTATCAACATTAATGTTTTGTTAGGGTGAGTATTTTTTTCATGGAAAGC
TCACGCTGCTAAAGCGAATTCAAACTAGAAATAAAATTTGCTGCTTTGTC
GGGTCTTAGCGACGTTATGTGTCTGCTACCTAACAGTTTTCTAAATAGAA
GATTAAGGGTTCACATATATAGCTTTGGATTAAGGCTTTTAGATATGTAA
GAAAATAACAATGGGtttgccaaaaacattttgataaGATAAACAGCACG
TTGAAAAAATCATTATATCAATTTANCAATTGTGCTTATTTTAATCATTG
CAGTGATCATTTACTGCTTAAAAAGACGTCGATCAAGTGACAACGCGGAC
AAAATGAAGTTGACAGAAAATGACGAAAACAAGAAACATTATGATGCAAC
TTACAGCTCCAAAGCGGCTTATGAATAGACAACTGCAGTATTTAGGTAAG
TTAAAGTCCCTTGCAATGCAAAAGCTCTTTTGtcataaacataaaatatc
ttcATGATATTTGAGGCAGTAATTCAAGGAGAAGGTTAGATAAGAACTTT
TTTTTACGTAATATCTCAAATTAACCGCGACTCTGATTTCTTTCCATGTG
ATCTATATGAAATACGAAACAATTACGAAACAAAGTTAATCCTTGACAAC
ATAATACGATTTGCAAGGCATTATTTGGTTCATTCTATATGTATTAATTT
GTCGATTGTCTATTCCGTAGGGATGAGCATCGGAGACCAAGCATGCATGC
ACTGAATGTATAAAACACAGAGTgtaaaaagttgaaggaaactCAGAGAG
AAGCTCATCATTCGATGTCCAAACTTATGTATTCTATCTAAAATTGTTTT
TCATGTCTAAATTTacttattttatttaaaatagccatcttttttaggca
aaaacgAATGTATGATGCCGTAAGATACTTCagttaaaaaatataatgat
aAACATTCCTCGGTTTCCAATTCTTTCTAGTTtgtggtcaatgcagtgat
ttTGTGATAAAGCCTTTTATCTTTTCACTTGATGAACTCGTTTGTTTTGC
AAACGTGTTCAACCTGGCGTATTAGGCAATTTCagagaatgatttttttt
ttcatatcagGATAACGTTTGATGTAGATAAATGACCAATTTGAAGTTTG
ACTCACTCACTCAGTTTACTTTACCCTTTTCCATGGAACGTTGTTAAAAA
A Run BLAST on NCBI transcript from alignment at scaffold_392:102066..104108+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063527 ID=TCONS_00063527|Name=TCONS_00063527|organism=Clytia hemisphaerica|type=transcript|length=2043bp|location=Sequence derived from alignment at scaffold_392:102066..104108+ (Clytia hemisphaerica)
gaattccaagggggtaatgattgaaaatttgtaaaaattcggaattccag
aggggtatgatcctaaaattgcctgaaATTCCCAGGGGGTAGGTcgcaaa
aggttggacctcctcaacaggcggcgcacggtttttttctggaaaaccca
ttttttgaatttggaaattttctgtCCTAGCCCGATTTGGGTAAGGCCTA
AATCTTAGGGAAGGGATCAATTTTTAACATTGGACTTTACTAATAAAcgc
ttcttttaaacgccccctcgaataaccaatttcaggttattttatttttc
gttGTGAATCCCAATACAATGAGTGATAAAATGAAATGACATTAGACCAC
AAAATAATTGAATAGCTTGAGCTGATCAATAAAAATACGAAACATATTTa
aatatgaacatttttaaaGAGCAAAGGTCTTATCTACTGTCTCTAATATC
AGACATAGAAAGTGTTATATTATTCCTTACAATACATTGTACATTTCTCA
TTTCTTTCACAATGTAATTTAATCTAATCTTATTTATCACGAAGGATGGT
atcttttaacaaaaaagaGTAGAAACTGGCTGATATCATTTGCTATTCAC
TCCAGTGCAAGCTAGAAAGACGGGTCGACACGGTACACGAGAATAtcaaa
aaagcatcaaaatgaaaatccaccTGAAACGTAGTATTTTAATCATCTTC
TTTATCAACATTAATGTTTTGTTAGGGTGAGTATTTTTTTCATGGAAAGC
TCACGCTGCTAAAGCGAATTCAAACTAGAAATAAAATTTGCTGCTTTGTC
GGGTCTTAGCGACGTTATGTGTCTGCTACCTAACAGTTTTCTAAATAGAA
GATTAAGGGTTCACATATATAGCTTTGGATTAAGGCTTTTAGATATGTAA
GAAAATAACAATGGGtttgccaaaaacattttgataaGATAAACAGCACG
TTGAAAAAATCATTATATCAATTTANCAATTGTGCTTATTTTAATCATTG
CAGTGATCATTTACTGCTTAAAAAGGTAATATTACCATCTTTCTCAAAAG
AAGAACGCATTTTTATATGGTTTTTAGACGTCCATAATTTCGGTGTTTTA
TAATAGAAAAGAATCAATaacttttaataactttttctgatgtgatgttt
tttctttctttgaataGACGTCGATCAAGTGACAACGCGGACAAAATGAA
GTTGACAGAAAATGACGAAAACAAGAAACATTATGATGCAACTTACAGCT
CCAAAGCGGCTTATGAATAGACAACTGCAGTATTTAGGTAAGTTAAAGTC
CCTTGCAATGCAAAAGCTCTTTTGtcataaacataaaatatcttcATGAT
ATTTGAGGCAGTAATTCAAGGAGAAGGTTAGATAAGAACTTTTTTTTACG
TAATATCTCAAATTAACCGCGACTCTGATTTCTTTCCATGTGATCTATAT
GAAATACGAAACAATTACGAAACAAAGTTAATCCTTGACAACATAATACG
ATTTGCAAGGCATTATTTGGTTCATTCTATATGTATTAATTTGTCGATTG
TCTATTCCGTAGGGATGAGCATCGGAGACCAAGCATGCATGCACTGAATG
TATAAAACACAGAGTgtaaaaagttgaaggaaactCAGAGAGAAGCTCAT
CATTCGATGTCCAAACTTATGTATTCTATCTAAAATTGTTTTTCATGTCT
AAATTTacttattttatttaaaatagccatcttttttaggcaaaaacgAA
TGTATGATGCCGTAAGATACTTCagttaaaaaatataatgataAACATTC
CTCGGTTTCCAATTCTTTCTAGTTtgtggtcaatgcagtgatttTGTGAT
AAAGCCTTTTATCTTTTCACTTGATGAACTCGTTTGTTTTGCAAACGTGT
TCAACCTGGCGTATTAGGCAATTTCagagaatgattttttttttcatatc
agGATAACGTTTGATGTAGATAAATGACCAATTTGAAGTTTGACTCACTC
ACTCAGTTTACTTTACCCTTTTCCATGGAACGTTGTTAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063527-exon-scaffold_392-1491911889:102066..103090 | TCONS_00063527-exon-scaffold_392-1491911889:102066..103090 | Clytia hemisphaerica | exon |
| TCONS_00063527-exon-scaffold_392-1510915933:102066..103090 | TCONS_00063527-exon-scaffold_392-1510915933:102066..103090 | Clytia hemisphaerica | exon |
| TCONS_00063527-exon-scaffold_392-1575043694:102066..103090 | TCONS_00063527-exon-scaffold_392-1575043694:102066..103090 | Clytia hemisphaerica | exon |
| TCONS_00063527-exon-scaffold_392-1491911889:103233..104108 | TCONS_00063527-exon-scaffold_392-1491911889:103233..104108 | Clytia hemisphaerica | exon |
| TCONS_00063527-exon-scaffold_392-1510915933:103233..104108 | TCONS_00063527-exon-scaffold_392-1510915933:103233..104108 | Clytia hemisphaerica | exon |
| TCONS_00063527-exon-scaffold_392-1575043694:103233..104108 | TCONS_00063527-exon-scaffold_392-1575043694:103233..104108 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_392 | supercontig | scaffold_392:102066..104108 + |
Blast
The following BLAST results are available for this feature:
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