TCONS_00063524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063524
Unique NameTCONS_00063524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length644

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063524 ID=TCONS_00063524|Name=TCONS_00063524|organism=Clytia hemisphaerica|type=transcript|length=644bp
AGCTGGACGAAGTAGCccttaaaagtgaaaatgaaatctgATTACTCTGA
TCACTCACTATTTGTATCCTGCATTTTGTGACCTTTTAAAGTcctagaat
tgaaatatttcaaaaagaatcGAATGGGAGGTAAAAGTAACATTTTGTAC
AGGAGGCAGATAGCTTtggatcaaaagaaaaatataatgaGGGGTTTCCC
ATTGCATTACTTAATTACTATGCTAAAACTAAATAGCTCTTAATGACATT
CTTTCTAATTGAGCGTTGAGTGCCGCTATTGTAAGTTTACGGAAATGCAG
TTTTGATGTTTCGTAACCCCCGTCAATTATGGATTAGCTTCCTAACCGGG
CTGAAGTATGGACGGAATAGAATCATTTCATAAATAGCGCTTCTCTTTGT
GTCCGAAGATTGGGAGGAGAacatatcaaaatatttttgccttgaAACCA
CCTGAAACATTCTCCAATAGGGTGGTCTATTTAAATTTCAAGTCACATCA
TTGTACCACACACACAGTCAGTACTATTCCTTCTCACTTAAAGTTTGACA
AAAGATTCGTAAACTAAGTACCGTAAAATTCCATTGGGAAAGGCTTCATT
TCCGCACACtaaagaatgaaaaatcttACCCATTGGAATGGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_391:73967..74610

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063524 ID=TCONS_00063524|Name=TCONS_00063524|organism=Clytia hemisphaerica|type=transcript|length=644bp|location=Sequence derived from alignment at scaffold_391:73967..74610 (Clytia hemisphaerica)
AAACCATTCCAATGGGTaagatttttcattctttaGTGTGCGGAAATGAA
GCCTTTCCCAATGGAATTTTACGGTACTTAGTTTACGAATCTTTTGTCAA
ACTTTAAGTGAGAAGGAATAGTACTGACTGTGTGTGTGGTACAATGATGT
GACTTGAAATTTAAATAGACCACCCTATTGGAGAATGTTTCAGGTGGTTt
caaggcaaaaatattttgatatgtTCTCCTCCCAATCTTCGGACACAAAG
AGAAGCGCTATTTATGAAATGATTCTATTCCGTCCATACTTCAGCCCGGT
TAGGAAGCTAATCCATAATTGACGGGGGTTACGAAACATCAAAACTGCAT
TTCCGTAAACTTACAATAGCGGCACTCAACGCTCAATTAGAAAGAATGTC
ATTAAGAGCTATTTAGTTTTAGCATAGTAATTAAGTAATGCAATGGGAAA
CCCCtcattatatttttcttttgatccaAAGCTATCTGCCTCCTGTACAA
AATGTTACTTTTACCTCCCATTCgattctttttgaaatatttcaattcta
ggACTTTAAAAGGTCACAAAATGCAGGATACAAATAGTGAGTGATCAGAG
TAATcagatttcattttcacttttaaggGCTACTTCGTCCAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039820XLOC_039820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063524-exon-scaffold_391-1491911889:73967..74610TCONS_00063524-exon-scaffold_391-1491911889:73967..74610Clytia hemisphaericaexon
TCONS_00063524-exon-scaffold_391-1510915933:73967..74610TCONS_00063524-exon-scaffold_391-1510915933:73967..74610Clytia hemisphaericaexon
TCONS_00063524-exon-scaffold_391-1575043694:73967..74610TCONS_00063524-exon-scaffold_391-1575043694:73967..74610Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_391supercontigscaffold_391:73967..74610 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0795319	0.369377	0.632411	0	0	0	0	0	0	0	0	0	0	0	0.0496992	0	0	0	0.0907232	0.0788549	0	0	0	0	0.0781499	0	0.11935	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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