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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063517 ID=TCONS_00063517|Name=TCONS_00063517|organism=Clytia hemisphaerica|type=transcript|length=1711bpRun BLAST on NCBI protein sequence of TCONS_00063517-protein >TCONS_00063517-protein ID=TCONS_00063517-protein|Name=TCONS_00063517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp MVQSSELSSYEKQRLQNIEDNKKMLESLGLLRSFKPILNPLVRKKPTERKRun BLAST on NCBI transcript from alignment at scaffold_391:37790..43112- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063517 ID=TCONS_00063517|Name=TCONS_00063517|organism=Clytia hemisphaerica|type=transcript|length=5323bp|location=Sequence derived from alignment at scaffold_391:37790..43112- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_391:37790..43112- >TCONS_00063517 ID=TCONS_00063517|Name=TCONS_00063517|organism=Clytia hemisphaerica|type=CDS|length=10440bp|location=Sequence derived from alignment at scaffold_391:37790..43112- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063517 vs. Swiss-Prot (Human)
Match: UHRF1 (E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 5.565e-38 Identity = 85/185 (45.95%), Postives = 106/185 (57.30%), Query Frame = 3
Query: 696 NYFGAPDTAFHIGYYWETRMGCSADGIHRPTIAGIHGNEAIGCYSIALSGGYEDDLDYGESFTFTGSGGRDLKGTKSNPKNLRTAPQSKDQMLDKMNLALSRNV---------------ESREPVRVIRGYK--LQSPFAPEYGYRYDGLYTVEKCWPSTGLSGFRVYKYVLKRVQDQPPPPWKE 1199
N++G P +G W R+ S G+HRP +AGIHG G YS+ L+GGYEDD+D+G FT+TGSGGRDL G K RTA QS DQ L N AL+ N S +PVRV+R K S +AP G RYDG+Y V K WP G SGF V++Y+L+R D+P P KE
Sbjct: 416 NHYG-PIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDHGNFFTYTGSGGRDLSGNK------RTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGPWTKE 593 The following BLAST results are available for this feature:
BLAST of TCONS_00063517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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