TCONS_00063515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063515
Unique NameTCONS_00063515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3675

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063515 ID=TCONS_00063515|Name=TCONS_00063515|organism=Clytia hemisphaerica|type=transcript|length=3675bp
GGGAATTTTTCGTTCCGATCTTTCAAAATCCAGAAATTTTGccgtttggt
ttttccaaaatcagaaaatttttggaaatgcgggagatgcgggagaaaat
ccaaaaaatgcgggagatttggcagaattttcttcacgcgggagaaatcg
ttgacatgcgggagtctcccgctcaatgcgggagagttgacagctatgag
tAGTACATGTACGATTTTTCTTGGACTCATTATTGCTATCAAAACTAAGG
ATCACATCTGTTTGAATCGAATGACAGAATGAAGTTGAAGTAGCCATGGC
ATGTGTTGTTTTAACTGTCTTTTGGCTTTGTcattccatcatcatcatca
ataatCATGTCTGACAGAATTGCGAGGGCTGGAACATTAGGCCACGAAGA
AGTTTTAGAGGACATTGAGTTGTACATTCGTGGCTTAGCTAGATCTTTTC
CTGAAACCAAAGAtccagaatttgaaaaaaagcttAATCAAGCCAATGTG
AATGTTCAAAGGTTAGCTCAAGGCAACACAAACGAGGCTAATGTACAACG
AGTACATGGTCTTGTTTCTAGATTAAAATCGAGATATAATGCACTCCCTT
TGGCTTCtgttaatgaagaaaaaaattctcgtTACAGCAAAAAGACAGTT
TCTGGGAAAAAAGGAAATAACCCATATGACATTGACATAACACATTTGAA
ATTCCTTTTGTCAATTGGACATAATGTCAAAGAAATTGCTGAAAAAGGGT
TACTTGGTGGCTCTATGCATAGAAACACTCTGACCAGATTCATGAAAGAC
AATAACATTCCAACACCAAGGGAGCGCTATTCTATCATTTCCGATGATGA
CCTTTTGATTCTCATCCGAAAAATAGCTTTAGATTTTCCGAACTCTGGTA
TTCGTGAGGTTACTGCTCTTCTTCGGACTGGAAATCCTCCTCACATTGTT
CAACGTGACAGAGTAGCTAGATTACTTTCTTTCTCGAATCCAGAGGCAAC
TGCAAGAAGATGGGCACAAGTGGTGCCACGTAGAGTTTACAGTGTTCCAA
CTCCTAATCACCTGTGGCACATTGATACACATCATAGTTTAATCAGGTGG
AACTTTGTCATACACAGTTGCATTGATGGTTTTAGTCGCTTTATTATATA
TTTAAAAATTCATACAAATAACCTGGCAAAAACAATGGTGTGTGACTTTA
TTGAAGGCGTTAAAGTGTCAGGTGTTCCAAGTCGTGTAAGAGCAGATCAT
GGCGGGGAATTTGTTCATGTCAAATCTTTGATGGAGTCTCTGAATGGGCC
TGACCATAACGCTTTTATATCTGGAAAGTCTGTTCATAATGTCCGCATTG
AACGATTATGGAGAGACGTGTTCTGTAAGGTATCCAATAAATTTTACAAC
ATTTTCAATATAATGGAAAAAAACGGCATCCTTGACATTGAAAACGAAGT
TCATATTGCAGCTCTCCATCATGTTTTTGGCTTGAGGATTCAAAATATTC
TTTCAACGTGGCGTGACGCACATAACCACCACCCTGTCAGCACTGAGCAC
TACAAAACACCCAGGCAACTATGGTTTCAAATTAATCAAATGGAGTCAAA
ACGTAACACAGCCATCAGTAATATCTTTCAACGTGATCTGGGAGAGGTTC
TCCAATTACTTGCAAGATTCAAAGGCACACGTGATCTTCCTGAGCCTGAC
TCTATCAAAAAAGTGCTTCCAAGAATCATGCTACCTCTAAACAGTTTGGA
ACTTGAAGAGTTGAATAGGACTGTATCTGTAGACTCTGAAAGTGAGCATG
AAGGTGTTGATATTTATGTGAGGGTGTTGGAATTTGTGGCTAGATGTATT
AGGAAATAAATTTCGTTAATTTTTTTTTTGAAATGGATATCGTATTTTGA
ACATTTGCTGCAAACGTTGTTGCCCTTTTTTCTCAAAATCAAGAGAAAGT
GAGTTACTTCCTTTTGTCAGAAAGGGGCAGAGTTGTGCCGTTGATCTAAA
AACGATAGTCATATATTGTGTAAAAGTAACCAAAGCCAATATCATATCGT
ATCATACTATATTATATATACATATATCTCTTTATTATAGGGCTAGTCTA
AAAATGTAGAACAAGATTGTTACCCGGGGGGTAATTAGGCAAAAATGGAT
GATGGGTATGACTCTCTCAAAAATCGAAAAAGAAAATTCAAAAAGTCTCT
CTAAGGGTCCGCTTTTCAGCAAAAATCGGTCTCTCTAAAGGTCGGTTTTC
GGAGGTCCCGTCCGCACATACCCCTCATTCGCCAACCCTAGTCCCCCCCC
CCCCCCCAGGTCTACACTTCTATGAGCAATTATTGTTGCTCTTGTCATTG
TTGACTCTGGTTTCTTGTAGATTTTCCATTTCTGTGCGTTTCTTGTTCGA
TCTGGTTGTGCTGCTGTGATTTGGTGTCCATTGACTGAGATGGCTTTATA
TGGCAATTGATCGAAGGGTGGTTTGGATTCGGTGTTCTGTTGTTTCAGGA
GAACAGTGTCCCCTAACTGGATGCTGTGATGCTTCACATATGGCTTGTTG
TCTTTATGATGGTGAGATTGCTTCCTCTTCTGCATGATCTCATTCTCTTC
TCATTCTGCTTCAGTGATGTCTTTTCTGCTGGCTGTGGTAGACGTGGTAG
AACATCCTCAGTATTTTCAGGTCTGCCTCCGTCTTTGATGTTTTGGATTT
TCTTTGGGTCCGATGTCACACGTTTAGAATGGAATGTTCGACCAAACTAT
TTGATTTTTGTCTGTCTGAACGTCAATTTGGATGGTTTGAGGATTGTGCC
ATTCTTTTTAAAATAATCCAGGAATGCCTCGAGGTTTCTATAATAATGAT
CATTCCAGTCTCTTCCATAGACTAGGATGTTGTCATGCAATGTAGTAACA
CCTTGGAGACCAGCAAATGCTTTCTGTATCTGATTGTGGAAGACGCCGCT
TGAGGCTGTAAGTCTAAAATGCAGAGTCTCTCAATTTTTGTAGACCTTCC
TGTGTTTTGAAGATGCTCTTTTCTTTGGATTTCTTATCTACCTGGAGTTT
ATGGTAACCCCAGCCTATGTCAATTTAGCTGAAAATCTTTGTTTCCTTCA
AGTCGTGGCGGATCTCCTGTAGTGTTTGAAATCGTGAAATCGGGTGCGCT
TCATTCCAGCATTGCGTGGTGTATGTCTTTGTTCATCCTGATTTGGCCAT
TACTTTTGTCTTTTATCACAACGTTTATAGCTTTTCCACACGTAGTCATA
GCGTTCCCGTGTGTCCACATCCGTTATCACTCCCTGTGTTTTCAGGAATT
ATTTGGCCTGGGTATGATGTCTGGCTCTTCCAGGGGGTCTCATGGCGCTG
TTGTAGTGTTCAGGTGTGATGGTGTGCTCACTGCCTGTGGCCGCGAAGAT
TGTGTGTTTTGTGCCGCTTATCTTGACGTCGACCCATTTGTCTGCTGGCG
TAGTCATCTTCTTCATGGCATTGGGTGTGGAGTGGTTTTGGTTTGAGTCA
TTTTGTTTTAACGTTGTGAAGTGATCTGCGTTGATTCGTTTGATCGTCTT
CTTTCCAGGACAGGTGGCATTCTTTACCATTTCTTAGGCATCTCCTTGAC
TAATGGCTGGAATTGAACCTGTTGCGGGATATTTTGTGTCTGTTGCTATA
TTTCCCTGCCTTTTTGAGCTTCCTT
Run BLAST on NCBI

protein sequence of TCONS_00063515-protein

>TCONS_00063515-protein ID=TCONS_00063515-protein|Name=TCONS_00063515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp
MSDRIARAGTLGHEEVLEDIELYIRGLARSFPETKDPEFEKKLNQANVNV
QRLAQGNTNEANVQRVHGLVSRLKSRYNALPLASVNEEKNSRYSKKTVSG
KKGNNPYDIDITHLKFLLSIGHNVKEIAEKGLLGGSMHRNTLTRFMKDNN
IPTPRERYSIISDDDLLILIRKIALDFPNSGIREVTALLRTGNPPHIVQR
DRVARLLSFSNPEATARRWAQVVPRRVYSVPTPNHLWHIDTHHSLIRWNF
VIHSCIDGFSRFIIYLKIHTNNLAKTMVCDFIEGVKVSGVPSRVRADHGG
EFVHVKSLMESLNGPDHNAFISGKSVHNVRIERLWRDVFCKVSNKFYNIF
NIMEKNGILDIENEVHIAALHHVFGLRIQNILSTWRDAHNHHPVSTEHYK
TPRQLWFQINQMESKRNTAISNIFQRDLGEVLQLLARFKGTRDLPEPDSI
KKVLPRIMLPLNSLELEELNRTVSVDSESEHEGVDIYVRVLEFVARCIRK
Run BLAST on NCBI

transcript from alignment at scaffold_391:1..5369-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063515 ID=TCONS_00063515|Name=TCONS_00063515|organism=Clytia hemisphaerica|type=transcript|length=5369bp|location=Sequence derived from alignment at scaffold_391:1..5369- (Clytia hemisphaerica)
GGGAATTTTTCGTTCCGATCTTTCAAAATCCAGAAATTTTGCCGTTTGGT
TTTTCCAAAATCAGAAAATTTTTGGAAATGCGGGAGATGCGGGAGAAAAT
CCAAAAAATGCGGGAGATTTGGCAGAATTTTCTTCACGCGGGAGAAATCG
TTGACATGCGGGAGTCTCCCGCTCAATGCGGGAGAGTTGACAGCTATGAG
TAGTACATGTACGATTTTTCTTGGACTCATTATTGCTATCAAAACTAAGG
ATCACATCTGTTTGAATCGAATGACAGAATGAAGTTGAAGTAGCCATGGC
ATGTGTTGTTTTAACTGTCTTTTGGCTTTGTCATTCCATCATCATCATCA
ATAATCATGTCTGACAGAATTGCGAGGGCTGGAACATTAGGCCACGAAGA
AGTTTTAGAGGACATTGAGTTGTACATTCGTGGCTTAGCTAGATCTTTTC
CTGAAACCAAAGATCCAGAATTTGAAAAAAAGCTTAATCAAGCCAATGTG
AATGTTCAAAGGTTAGCTCAAGGCAACACAAACGAGGCTAATGTACAACG
AGTACATGGTCTTGTTTCTAGATTAAAATCGAGATATAATGCACTCCCTT
TGGCTTCTGTTAATGAAGAAAAAAATTCTCGTTACAGCAAAAAGACAGTT
TCTGGGAAAAAAGGAAATAACCCATATGACATTGACATAACACATTTGAA
ATTCCTTTTGTCAATTGGACATAATGTCAAAGAAATTGCTGAAAAAGGGT
TACTTGGTGGCTCTATGCATAGAAACACTCTGACCAGATTCATGAAAGAC
AATAACATTCCAACACCAAGGGAGCGCTATTCTATCATTTCCGATGATGA
CCTTTTGATTCTCATCCGAAAAATAGCTTTAGATTTTCCGAACTCTGGTA
TTCGTGAGGTTACTGCTCTTCTTCGGACTGGAAATCCTCCTCACATTGTT
CAACGTGACAGAGTAGCTAGATTACTTTCTTTCTCGAATCCAGAGGCAAC
TGCAAGAAGATGGGCACAAGTGGTGCCACGTAGAGTTTACAGTGTTCCAA
CTCCTAATCACCTGTGGCACATTGATACACATCATAGTTTAATCAGGTTA
TACTTAAAGATTGATTTCTGCAAAATTAATTAGGCGGTCATCGAAAAATT
GTTCTATTCGCGTCACCCGCCCGCATCAAATTTTTCGCNCCGTCCGCCCG
CATGCATTTTTAACACCCGTAGCGACGCGAACAGAGCATTTTTTCGATGA
CCGCCTTATTCAGTGGCCTTTTGAGAGCAGGGGAAAAGTTAAAGTATTAG
GACTCTCTTTACTGTTAAATTTAGCGTCGTAGCTTTTTGTAATGCTGATA
TATACCAAATTCTGTCAAATTCTATTATAGCAACTATCTGGTCTGCAAAG
TAGCTAGAGTTATTTTTTTTAACAGCACTCAGGTTTTATTTATAAAATTT
AAAGGCCAGATAGTTTCTATGATGGAATCAGAAAATCAGAGAAGGTATGT
CAGCACTACACAAAGTAACAGTTGTATTCCTGTTTCAACATTTCAACGTG
TATTATCAACCTGAATTTCATTTTGATATCTGGCAATAAAAATGCTTATG
TTGGCCAGAAGAAACTGTTTCCAGTGTCTAAACCCCAAAACTTTGAAAAC
ATGACAACAATAGACCTTTTCATAAATCACGTCACAAACCGCTACAAAAT
TCAAAATTAATTAAAAAAAAATTTTTTTCAATGAAAGTATCAAAAACGTA
TTGAGAAAACTTATTTTTCATGTATTTTAAAGAGAAAAAAGTGTATTATT
ACATATTTTTCTTTTTAATTTTTTGAGCAAGAAGAAAAATTATTGAAAAA
AATAAATGAGCACCTAAATGTATTTTTTTTGTATCGTTTTTCTAAATGTA
TTTTAAAACAAAATAAAAACAGTATTGTTTTTTATCAAAGAAAATGTGTT
ATTTTCACATTGGTAAAAACATATTAAACTTATGTATTTAATAACACAAT
GCTCCAAAATATTTATTCAATATTGTACAAATTTGTATTATTGGAGTATT
TTTCCAATATGGATAAATCAGAGCCCTCAGAAAAGATTGTTGTGCAGCAA
TCTTTGGAATAATTTGTCAAATTCTATCTTTTAAAATACATTTTTATTGC
GTTTTTTAAACTTTACAATTGTAACCACACAAGGGAAATCATACCTAAAA
TTGTTTAAGTGTGATGAAAGTAAGATCCACAGTATCCTTATATGGTAAAG
ACTCTGATAAGTTTGAAGATGAGTAAAATTAGTAAGACTTTAGGCTGGTT
GAAATGGTTGATGGCATAACTCAAATCAAATATAATAAAAATGGGTAAAA
GTGAAAAGAGGAAATTACTCTAATCCAAAAAATAAAAAAATATGACAAGC
TGAAAACAAATGTTTATAAAAATATGTTTAATGTCCAAGGTTAATTGTAA
CACCATGGTAATTGTTTGAATATGAGGCAAGTGATGTTTGTGACGTAATT
TATAAAAAAGTCTATTTGAAGCTGCCTATTCCATTGATTTATTACATGAC
TAAATTTATTTTTTTTCACTGAAATAACTTCCAAAGGCTGTAGATGTCCC
CTAAAAATTTCCACTTTGAGAACTAAGTTTAGAACTATTCAGAAATCTCA
TGAAGTAAGGGTTCATAAAGTTTGTCACCAAGATTTTTAAGCTGTTATCT
TTTTTCTCTATCAGGTGGAACTTTGTCATACACAGTTGCATTGATGGTTT
TAGTCGCTTTATTATATATTTAAAAATTCATACAAATAACCTGGCAAAAA
CAATGGTGTGTGACTTTATTGAAGGCGTTAAAGTGTCAGGTGTTCCAAGT
CGTGTAAGAGCAGATCATGGCGGGGAATTTGTTCATGTCAAATCTTTGAT
GGAGTCTCTGAATGGGCCTGACCATAACGCTTTTATATCTGGAAAGTCTG
TTCATAATGTCCGCATTGAACGATTATGGAGAGACGTGTTCTGTAAGGTA
TCCAATAAATTTTACAACATTTTCAATATAATGGAAAAAAACGGCATCCT
TGACATTGAAAACGAAGTTCATATTGCAGCTCTCCATCATGTTTTTGGCT
TGAGGATTCAAAATATTCTTTCAACGTGGCGTGACGCACATAACCACCAC
CCTGTCAGCACTGAGCACTACAAAACACCCAGGCAACTATGGTTTCAAAT
TAATCAAATGGAGTCAAAACGTAACACAGCCATCAGTAATATCTTTCAAC
GTGATCTGGGAGAGGTTCTCCAATTACTTGCAAGATTCAAAGGCACACGT
GATCTTCCTGAGCCTGACTCTATCAAAAAAGTGCTTCCAAGAATCATGCT
ACCTCTAAACAGTTTGGAACTTGAAGAGTTGAATAGGACTGTATCTGTAG
ACTCTGAAAGTGAGCATGAAGGTGTTGATATTTATGTGAGGGTGTTGGAA
TTTGTGGCTAGATGTATTAGGAAATAAATTTCGTTAATTTTTTTTTTGAA
ATGGATATCGTATTTTGAACATTTGCTGCAAACGTTGTTGCCCTTTTTTC
TCAAAATCAAGAGAAAGTGAGTTACTTCCTTTTGTCAGAAAGGGGCAGAG
TTGTGCCGTTGATCTAAAAACGATAGTCATATATTGTGTAAAAGTAACCA
AAGCCAATATCATATCGTATCATACTATATTATATATACATATATCTCTT
TATTATAGGGCTAGTCTAAAAATGTAGAACAAGATTGTTACCCGGGGGGT
AATTAGGCAAAAATGGATGATGGGTATGACTCTCTCAAAAATCGAAAAAG
AAAATTCAAAAAGTCTCTCTAAGGGTCCGCTTTTCAGCAAAAATCGGTCT
CTCTAAAGGTCGGTTTTCGGAGGTCCCGTCCGCACATACCCCTCATTCGC
CAACCCTAGTCCCCCCCCCCCCCCCAGGTCTACACTTCTATGAGCAATTA
TTGTTGCTCTTGTCATTGTTGACTCTGGTTTCTTGTAGATTTTCCATTTC
TGTGCGTTTCTTGTTCGATCTGGTTGTGCTGCTGTGATTTGGTGTCCATT
GACTGAGATGGCTTTATATGGCAATTGATCGAAGGGTGGTTTGGATTCGG
TGTTCTGTTGTTTCAGGAGAACAGTGTCCCCTAACTGGATGCTGTGATGC
TTCACATATGGCTTGTTGTCTTTATGATGGTGAGATTGCTTCCTCTTCTG
CATGATCTCATTCTCTTCTCATTCTGCTTCAGTGATGTCTTTTCTGCTGG
CTGTGGTAGACGTGGTAGAACATCCTCAGTATTTTCAGGTCTGCCTCCGT
CTTTGATGTTTTGGATTTTCTTTGGGTCCGATGTCACACGTTTAGAATGG
AATGTTCGACCAAACTATTTGATTTTTGTCTGTCTGAACGTCAATTTGGA
TGGTTTGAGGATTGTGCCATTCTTTTTAAAATAATCCAGGAATGCCTCGA
GGTTTCTATAATAATGATCATTCCAGTCTCTTCCATAGACTAGGATGTTG
TCATGCAATGTAGTAACACCTTGGAGACCAGCAAATGCTTTCTGTATCTG
ATTGTGGAAGACGCCGCTTGAGGCTGTAAGTCTAAAATGCAGAGTCTCTC
AATTTTTGTAGACCTTCCTGTGTTTTGAAGATGCTCTTTTCTTTGGATTT
CTTATCTACCTGGAGTTTATGGTAACCCCAGCCTATGTCAATTTAGCTGA
AAATCTTTGTTTCCTTCAAGTCGTGGCGGATCTCCTGTAGTGTTTGAAAT
CGTGAAATCGGGTGCGCTTCATTCCAGCATTGCGTGGTGTATGTCTTTGT
TCATCCTGATTTGGCCATTACTTTTGTCTTTTATCACAACGTTTATAGCT
TTTCCACACGTAGTCATAGCGTTCCCGTGTGTCCACATCCGTTATCACTC
CCTGTGTTTTCAGGAATTATTTGGCCTGGGTATGATGTCTGGCTCTTCCA
GGGGGTCTCATGGCGCTGTTGTAGTGTTCAGGTGTGATGGTGTGCTCACT
GCCTGTGGCCGCGAAGATTGTGTGTTTTGTGCCGCTTATCTTGACTNTAG
TGTTCAGGTGTGATGGTGTGCTCACTGCCTGTGGCCGCGAAGATTGTGTG
TTTTGTGCCGCTTATCTTGACGTCGACCCATTTGTCTGCTGGCGTAGTCA
TCTTCTTCATGGCATTGGGTGTGGAGTGGTTTTGGTTTGAGTCATTTTGT
TTTAACGTTGTGAAGTGATCTGCGTTGATTCGTTTGATCGTCTTCTTTCC
AGGACAGGTGGCATTCTTTACCATTTCTTAGGCATCTCCTTGACTAATGG
CTGGAATTGAACCTGTTGCGGGATATTTTGTGTCTGTTGCTATATTTCCC
TGCCTTTTTGAGCTTCCTT

Coding sequence (CDS) from alignment at scaffold_391:1..5369-

>TCONS_00063515 ID=TCONS_00063515|Name=TCONS_00063515|organism=Clytia hemisphaerica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_391:1..5369- (Clytia hemisphaerica)
GTGGAACTTTGTCATACACAGTTGCATTGATGGTTTTAGTCGCTTTATTA
TATATTTAAAAATTCATACAAATAACCTGGCAAAAACAATGGTGTGTGAC
TTTATTGAAGGCGTTAAAGTGTCAGGTGTTCCAAGTCGTGTAAGAGCAGA
TCATGGCGGGGAATTTGTTCATGTCAAATCTTTGATGGAGTCTCTGAATG
GGCCTGACCATAACGCTTTTATATCTGGAAAGTCTGTTCATAATGTCCGC
ATTGAACGATTATGGAGAGACGTGTTCTGTAAGGTATCCAATAAATTTTA
CAACATTTTCAATATAATGGAAAAAAACGGCATCCTTGACATTGAAAACG
AAGTTCATATTGCAGCTCTCCATCATGTTTTTGGCTTGAGGATTCAAAAT
ATTCTTTCAACGTGGCGTGACGCACATAACCACCACCCTGTCAGCACTGA
GCACTACAAAACACCCAGGCAACTATGGTTTCAAATTAATCAAATGGAGT
CAAAACGTAACACAGCCATCAGTAATATCTTTCAACGTGATCTGGGAGAG
GTTCTCCAATTACTTGCAAGATTCAAAGGCACACGTGATCTTCCTGAGCC
TGACTCTATCAAAAAAGTGCTTCCAAGAATCATGCTACCTCTAAACAGTT
TGGAACTTGAAGAGTTGAATAGGACTGTATCTGTAGACTCTGAAAGTGAG
CATGAAGGTGTTGATATTTATGTGAGGGTGTTGGAATTTGTGGCTAGATG
TATTAGGAAATAAATGTCTGACAGAATTGCGAGGGCTGGAACATTAGGCC
ACGAAGAAGTTTTAGAGGACATTGAGTTGTACATTCGTGGCTTAGCTAGA
TCTTTTCCTGAAACCAAAGATCCAGAATTTGAAAAAAAGCTTAATCAAGC
CAATGTGAATGTTCAAAGGTTAGCTCAAGGCAACACAAACGAGGCTAATG
TACAACGAGTACATGGTCTTGTTTCTAGATTAAAATCGAGATATAATGCA
CTCCCTTTGGCTTCTGTTAATGAAGAAAAAAATTCTCGTTACAGCAAAAA
GACAGTTTCTGGGAAAAAAGGAAATAACCCATATGACATTGACATAACAC
ATTTGAAATTCCTTTTGTCAATTGGACATAATGTCAAAGAAATTGCTGAA
AAAGGGTTACTTGGTGGCTCTATGCATAGAAACACTCTGACCAGATTCAT
GAAAGACAATAACATTCCAACACCAAGGGAGCGCTATTCTATCATTTCCG
ATGATGACCTTTTGATTCTCATCCGAAAAATAGCTTTAGATTTTCCGAAC
TCTGGTATTCGTGAGGTTACTGCTCTTCTTCGGACTGGAAATCCTCCTCA
CATTGTTCAACGTGACAGAGTAGCTAGATTACTTTCTTTCTCGAATCCAG
AGGCAACTGCAAGAAGATGGGCACAAGTGGTGCCACGTAGAGTTTACAGT
GTTCCAACTCCTAATCACCTGTGGCACATTGATACACATCATAGTTTAAT
CAGGTGGAACTTTGTCATACACAGTTGCATTGATGGTTTTAGTCGCTTTA
TTATATATTTAAAAATTCATACAAATAACCTGGCAAAAACAATGGTGTGT
GACTTTATTGAAGGCGTTAAAGTGTCAGGTGTTCCAAGTCGTGTAAGAGC
AGATCATGGCGGGGAATTTGTTCATGTCAAATCTTTGATGGAGTCTCTGA
ATGGGCCTGACCATAACGCTTTTATATCTGGAAAGTCTGTTCATAATGTC
CGCATTGAACGATTATGGAGAGACGTGTTCTGTAAGGTATCCAATAAATT
TTACAACATTTTCAATATAATGGAAAAAAACGGCATCCTTGACATTGAAA
ACGAAGTTCATATTGCAGCTCTCCATCATGTTTTTGGCTTGAGGATTCAA
AATATTCTTTCAACGTGGCGTGACGCACATAACCACCACCCTGTCAGCAC
TGAGCACTACAAAACACCCAGGCAACTATGGTTTCAAATTAATCAAATGG
AGTCAAAACGTAACACAGCCATCAGTAATATCTTTCAACGTGATCTGGGA
GAGGTTCTCCAATTACTTGCAAGATTCAAAGGCACACGTGATCTTCCTGA
GCCTGACTCTATCAAAAAAGTGCTTCCAAGAATCATGCTACCTCTAAACA
GTTTGGAACTTGAAGAGTTGAATAGGACTGTATCTGTAGACTCTGAAAGT
GAGCATGAAGGTGTTGATATTTATGTGAGGGTGTTGGAATTTGTGGCTAG
ATGTATTAGGAAATAAATGTCTGACAGAATTGCGAGGGCTGGAACATTAG
GCCACGAAGAAGTTTTAGAGGACATTGAGTTGTACATTCGTGGCTTAGCT
AGATCTTTTCCTGAAACCAAAGATCCAGAATTTGAAAAAAAGCTTAATCA
AGCCAATGTGAATGTTCAAAGGTTAGCTCAAGGCAACACAAACGAGGCTA
ATGTACAACGAGTACATGGTCTTGTTTCTAGATTAAAATCGAGATATAAT
GCACTCCCTTTGGCTTCTGTTAATGAAGAAAAAAATTCTCGTTACAGCAA
AAAGACAGTTTCTGGGAAAAAAGGAAATAACCCATATGACATTGACATAA
CACATTTGAAATTCCTTTTGTCAATTGGACATAATGTCAAAGAAATTGCT
GAAAAAGGGTTACTTGGTGGCTCTATGCATAGAAACACTCTGACCAGATT
CATGAAAGACAATAACATTCCAACACCAAGGGAGCGCTATTCTATCATTT
CCGATGATGACCTTTTGATTCTCATCCGAAAAATAGCTTTAGATTTTCCG
AACTCTGGTATTCGTGAGGTTACTGCTCTTCTTCGGACTGGAAATCCTCC
TCACATTGTTCAACGTGACAGAGTAGCTAGATTACTTTCTTTCTCGAATC
CAGAGGCAACTGCAAGAAGATGGGCACAAGTGGTGCCACGTAGAGTTTAC
AGTGTTCCAACTCCTAATCACCTGTGGCACATTGATACACATCATAGTTT
AATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039815XLOC_039815Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063515-proteinTCONS_00063515-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063515-exon-scaffold_391-1575043694:4274..5369TCONS_00063515-exon-scaffold_391-1575043694:4274..5369Clytia hemisphaericaexon
TCONS_00063515-exon-scaffold_391-1575043694:389..2655TCONS_00063515-exon-scaffold_391-1575043694:389..2655Clytia hemisphaericaexon
TCONS_00063515-exon-scaffold_391-1575043694:1..312TCONS_00063515-exon-scaffold_391-1575043694:1..312Clytia hemisphaericaexon
TCONS_00063515-exon-scaffold_391-1510915933:4274..5369TCONS_00063515-exon-scaffold_391-1510915933:4274..5369Clytia hemisphaericaexon
TCONS_00063515-exon-scaffold_391-1510915933:389..2655TCONS_00063515-exon-scaffold_391-1510915933:389..2655Clytia hemisphaericaexon
TCONS_00063515-exon-scaffold_391-1510915933:1..312TCONS_00063515-exon-scaffold_391-1510915933:1..312Clytia hemisphaericaexon
TCONS_00063515-exon-scaffold_391-1491911889:4274..5369TCONS_00063515-exon-scaffold_391-1491911889:4274..5369Clytia hemisphaericaexon
TCONS_00063515-exon-scaffold_391-1491911889:389..2655TCONS_00063515-exon-scaffold_391-1491911889:389..2655Clytia hemisphaericaexon
TCONS_00063515-exon-scaffold_391-1491911889:1..312TCONS_00063515-exon-scaffold_391-1491911889:1..312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_391supercontigscaffold_391:1..5369 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.997336	1.21725	1.64177	2.02827	6.4926	6.37736	6.4011	7.2831	5.09159	5.57766	4.25492	4.38672	3.55494	4.76466	1.78086	2.52059	2.01735	2.30495	2.21074	2.61013	2.03963	1.03416	0.814594	0.682211	5.93095	5.37146	0.000522737	0.713385	1.28887	0.517737
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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