TCONS_00063492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063492
Unique NameTCONS_00063492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063492 ID=TCONS_00063492|Name=TCONS_00063492|organism=Clytia hemisphaerica|type=transcript|length=538bp
tggaattccgccacatatcaaaccttacccccttggaacggaaatggacc
tcctcaacagggggtatacggtttttttctggaaaagcccaatgtcgATT
CAGCCATTCTTCTTCAGTCTCATGCTAGAATGAAACGTGAggttaattat
ttttctttttaggaaCATTCATGATGTTTGGGTCGGTCAATTTCACGATG
TGTCAACACGAAAGTTCAAATGGGCTAGTGCTTCATATAGTCCCCATAGA
AACTGGTGCACTGATGAACCCGCCATTGATGAAAGTTCGACAACGCCCGC
GCCCGAACCAAGCGGCCAGTGTGTATTCTTCCTTGCTGGTCAAGGGTGTT
TTGGAGTTAATTTGTGTGGCGGTCGTCAAGACGATGGGGCACTTATCCTT
GTTCCTAAACAATTTGTTTGTCAGATTGGAGGAACTGATTATACGGAAAA
AGCTATGTTACGTGATTTGATCTCGGTTATCTTGCAGAAAACAAGTGAGA
TTAAAAAAGATTGCCAATCGTGCAGGAAGATATCAAGT
Run BLAST on NCBI

transcript from alignment at scaffold_39:209792..210329

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063492 ID=TCONS_00063492|Name=TCONS_00063492|organism=Clytia hemisphaerica|type=transcript|length=538bp|location=Sequence derived from alignment at scaffold_39:209792..210329 (Clytia hemisphaerica)
ACTTGATATCTTCCTGCACGATTGGCAATCTTTTTTAATCTCACTTGTTT
TCTGCAAGATAACCGAGATCAAATCACGTAACATAGCTTTTTCCGTATAA
TCAGTTCCTCCAATCTGACAAACAAATTGTTTAGGAACAAGGATAAGTGC
CCCATCGTCTTGACGACCGCCACACAAATTAACTCCAAAACACCCTTGAC
CAGCAAGGAAGAATACACACTGGCCGCTTGGTTCGGGCGCGGGCGTTGTC
GAACTTTCATCAATGGCGGGTTCATCAGTGCACCAGTTTCTATGGGGACT
ATATGAAGCACTAGCCCATTTGAACTTTCGTGTTGACACATCGTGAAATT
GACCGACCCAAACATCATGAATGttcctaaaaagaaaaataattaaccTC
ACGTTTCATTCTAGCATGAGACTGAAGAAGAATGGCTGAATcgacattgg
gcttttccagaaaaaaaccgtataccccctgttgaggaggtccatttccg
ttccaagggggtaaggtttgatatgtggcggaattcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039799XLOC_039799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063492-exon-scaffold_39-1491911889:209792..210329TCONS_00063492-exon-scaffold_39-1491911889:209792..210329Clytia hemisphaericaexon
TCONS_00063492-exon-scaffold_39-1510915933:209792..210329TCONS_00063492-exon-scaffold_39-1510915933:209792..210329Clytia hemisphaericaexon
TCONS_00063492-exon-scaffold_39-1575043694:209792..210329TCONS_00063492-exon-scaffold_39-1575043694:209792..210329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:209792..210329 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.56356	2.01189	1.44235	0.664661	0.170427	0.275475	0	0	0.103513	0.299984	0	0	0.239697	0.580825	0.267238	0	0.100576	0.220557	2.18898	0.155276	0	0	0.621229	0.309637	0.938291	0.974569	0	0.607973	1.07321	1.10104
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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