TCONS_00063486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063486
Unique NameTCONS_00063486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063486 ID=TCONS_00063486|Name=TCONS_00063486|organism=Clytia hemisphaerica|type=transcript|length=215bp
NNCATGACGTAGTCAATGTAGAGGTTGAACAACAGAGGACTCTCAGGTCC
TCCTTGACGAACACCTGATGATACATGGAATGAAGTGTTCGCTTCATGGA
AGGTCAAGAATGTTTTACTGTATAACTTCTCTAAGATATCGAATAGTTTT
AGGTCAGCATTATCAGGAAAGCgaattttgattgattgaaataGCCAGTC
TCTGGGTATATGGTC
Run BLAST on NCBI

transcript from alignment at scaffold_39:136379..136593

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063486 ID=TCONS_00063486|Name=TCONS_00063486|organism=Clytia hemisphaerica|type=transcript|length=215bp|location=Sequence derived from alignment at scaffold_39:136379..136593 (Clytia hemisphaerica)
GACCATATACCCAGAGACTGGCtatttcaatcaatcaaaattcGCTTTCC
TGATAATGCTGACCTAAAACTATTCGATATCTTAGAGAAGTTATACAGTA
AAACATTCTTGACCTTCCATGAAGCGAACACTTCATTCCATGTATCATCA
GGTGTTCGTCAAGGAGGACCTGAGAGTCCTCTGTTGTTCAACCTCTACAT
TGACTACGTCATGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039793XLOC_039793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063486-exon-scaffold_39-1491911889:136379..136593TCONS_00063486-exon-scaffold_39-1491911889:136379..136593Clytia hemisphaericaexon
TCONS_00063486-exon-scaffold_39-1510915933:136379..136593TCONS_00063486-exon-scaffold_39-1510915933:136379..136593Clytia hemisphaericaexon
TCONS_00063486-exon-scaffold_39-1575043694:136379..136593TCONS_00063486-exon-scaffold_39-1575043694:136379..136593Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:136379..136593 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33629	0	0	5.92102	10.8124	5.69607	6.87206	3.21677	0	1.39482	8.12307	5.10825	9.77599	3.69181	3.03517	8.82134	2.0063	1.0282	7.10255	14.8646	2.58401	0	0	1.39296	1.43472	5.12181	3.66465	5.86652	2.96636	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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