|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063483 ID=TCONS_00063483|Name=TCONS_00063483|organism=Clytia hemisphaerica|type=transcript|length=1576bp
gttaaaagatattttctttttttaaatataatatcgagatagaaaatgta
aaataaaataaaaccacaACTTCTTTTAAACTGAACCTTTTCAttatata
caaaatatttttgttttttgttgtatAAAATATAAATAGCAACTATATAA
atgtaatttgaaaaaatttttttccttacAACTCAAGTTGTataaaacac
aactcaaaaataaatttcatactAAAAGAAGTTCCGAGCAAATTCAGTTT
AAAATGTTTCGTGACCAATCTCAAGTCAAAAGGCATGGCCaagtcaattt
gagggtgctgaatctgaattcgaatgttaccaagcttgaaaacgtGCAGT
TTTAGTGTAATTTGCCATGTTttgcattttcaggcaaaattgcaaggcct
gaaaatgtgattttttgggggTCTTCAAACTgcgcaaaaaagtgtattac
aaaGTCTAAActattttagataaaaaattattgGCATAATTGTGGTCAAA
AACtaatggaaaacagggaatttgcCAACAAtgtgcataatttatgcaaa
acaaAAACACCTTTTTGGACCACAAATATTTTGATCCAAAGAAGTTGAGG
Cttgataaaacaaattttttgagcaatttgaagacccccaaaaatcattg
cattgcaattttgcctgaaacgcaaaaaatcgcaacaTTGGCAAAAACTG
CACGTTTTCAAGCTTGGCAACATTcaaatttgaattcaaaaaCCAACTCA
AAACGGAACCAAAATCAAATGCAAAAGCTTGGTAagagacattttgaaaa
aaaagtgaatcgTTTTGGTGCTACTGGCCATGGTCCTTCAAAATCTAATA
TCTCAGCTTCAGAAATCAATAATGCGAAGGGAAACCAAtcaagaatgaga
aaataataaaaaaacaacaacagagTAACTCAAAAAGAGGGCAACTCTCA
TACTAAAATAAGGCTCAAGTTGAACAATAACAAAAGCTTGAATTGACGAT
ATTGGCAATAGAGCTAACAAAAGCAAGTTTGTTAGCTCATGTTGAGAGTT
GCCCCCTTTTCGACAGTTATAGAATAGTGTTTTGCGCCTGGCCCAGGACG
CAAATAAACTTGAGATCTGGATCTGGATCTGGATGTTGAAGtcttattat
tttcagttttccGTTTTAATCGGCGACGTTGTTGTTGTTGCCGCCGCCAC
TTCTGTGCATAACCGGGCTCATCCTTGCCGCCATTtaattgccaaaaatg
atgaGCATTTTCAGACTTCCCGGATTGTTCCTACGGTATCTTTGAAATGC
TTGGAAGCTCAAAtcctgaaaaagtaaaaaaatgacgAAGAGTTGATAAT
TGAGGCCTTAAGTTCACAACAAAGGGTTCATCCGCCGGTTCAACCTCTAA
CTCATCATTGAGTTCAAGAAGTGCATTATATCTATCCTCACTATAGGGTA
CAACNCCCAACATGGAAGTAAGCCAAACACGAAAAGTGAGAACCCCCGGA
AAAATTTGCCGAAGAAAGACAATAccgctagcgaaaaagcttgatgcgag
aatgggagagttccgatttaagcgta Run BLAST on NCBI protein sequence of TCONS_00063483-protein >TCONS_00063483-protein ID=TCONS_00063483-protein|Name=TCONS_00063483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MQNKNTFLDHKYFDPKKLRLDKTNFLSNLKTPKNHCIAILPETQKIATLA
KTARFQAWQHSNLNSKTNSKRNQNQMQKLGKRHFEKKVNRFGATGHGPSK
SNISASEINNAKGNQSRMRK Run BLAST on NCBI transcript from alignment at scaffold_39:118325..119900 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063483 ID=TCONS_00063483|Name=TCONS_00063483|organism=Clytia hemisphaerica|type=transcript|length=1576bp|location=Sequence derived from alignment at scaffold_39:118325..119900 (Clytia hemisphaerica)
tacgcttaaatcggaactctcccattctcgcatcaagctttttcgctagc
ggTATTGTCTTTCTTCGGCAAATTTTTCCGGGGGTTCTCACTTTTCGTGT
TTGGCTTACTTCCATGTTGGGNGTTGTACCCTATAGTGAGGATAGATATA
ATGCACTTCTTGAACTCAATGATGAGTTAGAGGTTGAACCGGCGGATGAA
CCCTTTGTTGTGAACTTAAGGCCTCAATTATCAACTCTTcgtcatttttt
tactttttcaggaTTTGAGCTTCCAAGCATTTCAAAGATACCGTAGGAAC
AATCCGGGAAGTCTGAAAATGCtcatcatttttggcaattaAATGGCGGC
AAGGATGAGCCCGGTTATGCACAGAAGTGGCGGCGGCAACAACAACAACG
TCGCCGATTAAAACggaaaactgaaaataataagaCTTCAACATCCAGAT
CCAGATCCAGATCTCAAGTTTATTTGCGTCCTGGGCCAGGCGCAAAACAC
TATTCTATAACTGTCGAAAAGGGGGCAACTCTCAACATGAGCTAACAAAC
TTGCTTTTGTTAGCTCTATTGCCAATATCGTCAATTCAAGCTTTTGTTAT
TGTTCAACTTGAGCCTTATTTTAGTATGAGAGTTGCCCTCTTTTTGAGTT
ActctgttgttgtttttttattattttctcattcttgaTTGGTTTCCCTT
CGCATTATTGATTTCTGAAGCTGAGATATTAGATTTTGAAGGACCATGGC
CAGTAGCACCAAAAcgattcacttttttttcaaaatgtctctTACCAAGC
TTTTGCATTTGATTTTGGTTCCGTTTTGAGTTGGtttttgaattcaaatt
tgAATGTTGCCAAGCTTGAAAACGTGCAGTTTTTGCCAAtgttgcgattt
tttgcgtttcaggcaaaattgcaatgcaatgatttttgggggtcttcaaa
ttgctcaaaaaatttgttttatcaaGCCTCAACTTCTTTGGATCAAAATA
TTTGTGGTCCAAAAAGGTGTTTttgttttgcataaattatgcacaTTGTT
GgcaaattccctgttttccattaGTTTTTGACCACAATTATGCcaataat
tttttatctaaaatagTTTAGACtttgtaatacacttttttgcgcAGTTT
GAAGAcccccaaaaaatcacattttcaggccttgcaattttgcctgaaaa
tgcaaAACATGGCAAATTACACTAAAACTGCacgttttcaagcttggtaa
cattcgaattcagattcagcaccctcaaattgacttGGCCATGCCTTTTG
ACTTGAGATTGGTCACGAAACATTTTAAACTGAATTTGCTCGGAACTTCT
TTTagtatgaaatttatttttgagttgtgttttatACAACTTGAGTTgta
aggaaaaaaattttttcaaattacatTTATATAGTTGCTATTTATATTTT
atacaacaaaaaacaaaaatattttgtatataaTGAAAAGGTTCAGTTTA
AAAGAAGTtgtggttttattttattttacattttctatctcgatattata
tttaaaaaaagaaaatatcttttaac Coding sequence (CDS) from alignment at scaffold_39:118325..119900 >TCONS_00063483 ID=TCONS_00063483|Name=TCONS_00063483|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_39:118325..119900 (Clytia hemisphaerica)
ttattttctcattcttgaTTGGTTTCCCTTCGCATTATTGATTTCTGAAG
CTGAGATATTAGATTTTGAAGGACCATGGCCAGTAGCACCAAAAcgattc
acttttttttcaaaatgtctctTACCAAGCTTTTGCATTTGATTTTGGTT
CCGTTTTGAGTTGGtttttgaattcaaatttgAATGTTGCCAAGCTTGAA
AACGTGCAGTTTTTGCCAAtgttgcgattttttgcgtttcaggcaaaatt
gcaatgcaatgatttttgggggtcttcaaattgctcaaaaaatttgtttt
atcaaGCCTCAACTTCTTTGGATCAAAATATTTGTGGTCCAAAAAGGTGT
TTttgttttgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063483-exon-scaffold_39-1491911889:118325..119900 | TCONS_00063483-exon-scaffold_39-1491911889:118325..119900 | Clytia hemisphaerica | exon |
| TCONS_00063483-exon-scaffold_39-1510915933:118325..119900 | TCONS_00063483-exon-scaffold_39-1510915933:118325..119900 | Clytia hemisphaerica | exon |
| TCONS_00063483-exon-scaffold_39-1575043694:118325..119900 | TCONS_00063483-exon-scaffold_39-1575043694:118325..119900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:118325..119900 . |
Blast
The following BLAST results are available for this feature:
|
