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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063479 ID=TCONS_00063479|Name=TCONS_00063479|organism=Clytia hemisphaerica|type=transcript|length=1202bp
GGCATAGTACCCATACAATATATACACTACTGTCCATCTGAAAAGATGAG
GAGAACATGGTCTCAAGTTTATATACATATATACATGTTTATGTGATGAT
AGGGTATCCAAGTTCGCCCTATGACGTTCTGACAGTCAAGTGAGTCTCTA
AACAGGAAGCCATGAAATATCAACAACACATTGTCAAGCTTCACGTTCCA
AGCTGAAACTTTGATGAGCAGGGTATCTTAATAGTTCGCCCTGTGATGAC
ACAATTCGTATCATAAAGTCAAGAAGATGTCAACATGACATACAGATTCT
AAGAGATAACGAACAGGGTGTCTTAACAGTTCGCCCTGTGATTATGATGT
GTAAACCGTACCATACAGTCCAGGTACCTATTTCAACACATAGTCAATCA
AGTGTCCAGGGACTCTCTTATTGCGTTGAGATCGCCTGGGTTGTAGCGTT
GAGTGTTGTGCTTGTTGAGCAGAGCGTGTAGGAGTACTGTACGCCGTAAC
CTTCGAAGGTGAACCATTAGAGGCAAATGGTGTTGATCGAGTAGGCTCTG
CTGATTGTTGGATGGTTGACGGTGTTGGTTGGACGTCAGAATGTTGTACT
ACAATTCGTTGAGTACGTGGTGTTGTAACTTCCCTCATTGGTGGTGCAGG
TGATGTTGGACGCTCATCGTTCTTCACTGCCACGGGGGCAGCAGTTTTGT
CCAGTCCTGAATATGAGGGGTGATTTGGGAGGACTGGACGCGTTTGTGAT
GGATATGTAAGTGTGGGAGGTGAAGTATGAGTTTGAGTTAATGGTTGTGG
AGTGGGAGGTGATGGGATTTGGAAGGAAGAGTTCTGAGGCATGACAGGGG
TGAAGCGCCTCAGAAATTTCCTGTTGCGGAGAGTAACTCTCCCTGATCCA
TCCACTCTGACAGCATATTGATCGAACTGTCTGACTTCAATGATTGATCC
AGTCCTGTCCCATTTGCGCGGATTTGGTCCAACTTGATTCTGGATACGTA
CATGATCTCCTACCTTCAGTGGTGGTAGGGGGCGGGTCCCGATGGCAAGT
CGTTCAGCAGTCTTGAAGTGACGTAGTCGTAGGGCTTCCTCACGCTTCTG
GAGGGTGTCTTGCCAAGTGGGATGCGGACGATACTTTCCAGGTAGGATTG
GTACTGGTGATCGGATGGGATGGCCAAATGTGCATATAGCAGGTGAGACT
TG Run BLAST on NCBI protein sequence of TCONS_00063479-protein >TCONS_00063479-protein ID=TCONS_00063479-protein|Name=TCONS_00063479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
QVSPAICTFGHPIRSPVPILPGKYRPHPTWQDTLQKREEALRLRHFKTAE
RLAIGTRPLPPLKVGDHVRIQNQVGPNPRKWDRTGSIIEVRQFDQYAVRV
DGSGRVTLRNRKFLRRFTPVMPQNSSFQIPSPPTPQPLTQTHTSPPTLTY
PSQTRPVLPNHPSYSGLDKTAAPVAVKNDERPTSPAPPMREVTTPRTQRI
VVQHSDVQPTPSTIQQSAEPTRSTPFASNGSPSKVTAYSTPTRSAQQAQH
STLQPRRSQRNKRVPGHLIDYVLK Run BLAST on NCBI transcript from alignment at scaffold_39:23159..24360 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063479 ID=TCONS_00063479|Name=TCONS_00063479|organism=Clytia hemisphaerica|type=transcript|length=1202bp|location=Sequence derived from alignment at scaffold_39:23159..24360 (Clytia hemisphaerica)
CAAGTCTCACCTGCTATATGCACATTTGGCCATCCCATCCGATCACCAGT
ACCAATCCTACCTGGAAAGTATCGTCCGCATCCCACTTGGCAAGACACCC
TCCAGAAGCGTGAGGAAGCCCTACGACTACGTCACTTCAAGACTGCTGAA
CGACTTGCCATCGGGACCCGCCCCCTACCACCACTGAAGGTAGGAGATCA
TGTACGTATCCAGAATCAAGTTGGACCAAATCCGCGCAAATGGGACAGGA
CTGGATCAATCATTGAAGTCAGACAGTTCGATCAATATGCTGTCAGAGTG
GATGGATCAGGGAGAGTTACTCTCCGCAACAGGAAATTTCTGAGGCGCTT
CACCCCTGTCATGCCTCAGAACTCTTCCTTCCAAATCCCATCACCTCCCA
CTCCACAACCATTAACTCAAACTCATACTTCACCTCCCACACTTACATAT
CCATCACAAACGCGTCCAGTCCTCCCAAATCACCCCTCATATTCAGGACT
GGACAAAACTGCTGCCCCCGTGGCAGTGAAGAACGATGAGCGTCCAACAT
CACCTGCACCACCAATGAGGGAAGTTACAACACCACGTACTCAACGAATT
GTAGTACAACATTCTGACGTCCAACCAACACCGTCAACCATCCAACAATC
AGCAGAGCCTACTCGATCAACACCATTTGCCTCTAATGGTTCACCTTCGA
AGGTTACGGCGTACAGTACTCCTACACGCTCTGCTCAACAAGCACAACAC
TCAACGCTACAACCCAGGCGATCTCAACGCAATAAGAGAGTCCCTGGACA
CTTGATTGACTATGTGTTGAAATAGGTACCTGGACTGTATGGTACGGTTT
ACACATCATAATCACAGGGCGAACTGTTAAGACACCCTGTTCGTTATCTC
TTAGAATCTGTATGTCATGTTGACATCTTCTTGACTTTATGATACGAATT
GTGTCATCACAGGGCGAACTATTAAGATACCCTGCTCATCAAAGTTTCAG
CTTGGAACGTGAAGCTTGACAATGTGTTGTTGATATTTCATGGCTTCCTG
TTTAGAGACTCACTTGACTGTCAGAACGTCATAGGGCGAACTTGGATACC
CTATCATCACATAAACATGTATATATGTATATAAACTTGAGACCATGTTC
TCCTCATCTTTTCAGATGGACAGTAGTGTATATATTGTATGGGTACTATG
CC Coding sequence (CDS) from alignment at scaffold_39:23159..24360 >TCONS_00063479 ID=TCONS_00063479|Name=TCONS_00063479|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_39:23159..24360 (Clytia hemisphaerica)
CAAGTCTCACCTGCTATATGCACATTTGGCCATCCCATCCGATCACCAGT
ACCAATCCTACCTGGAAAGTATCGTCCGCATCCCACTTGGCAAGACACCC
TCCAGAAGCGTGAGGAAGCCCTACGACTACGTCACTTCAAGACTGCTGAA
CGACTTGCCATCGGGACCCGCCCCCTACCACCACTGAAGGTAGGAGATCA
TGTACGTATCCAGAATCAAGTTGGACCAAATCCGCGCAAATGGGACAGGA
CTGGATCAATCATTGAAGTCAGACAGTTCGATCAATATGCTGTCAGAGTG
GATGGATCAGGGAGAGTTACTCTCCGCAACAGGAAATTTCTGAGGCGCTT
CACCCCTGTCATGCCTCAGAACTCTTCCTTCCAAATCCCATCACCTCCCA
CTCCACAACCATTAACTCAAACTCATACTTCACCTCCCACACTTACATAT
CCATCACAAACGCGTCCAGTCCTCCCAAATCACCCCTCATATTCAGGACT
GGACAAAACTGCTGCCCCCGTGGCAGTGAAGAACGATGAGCGTCCAACAT
CACCTGCACCACCAATGAGGGAAGTTACAACACCACGTACTCAACGAATT
GTAGTACAACATTCTGACGTCCAACCAACACCGTCAACCATCCAACAATC
AGCAGAGCCTACTCGATCAACACCATTTGCCTCTAATGGTTCACCTTCGA
AGGTTACGGCGTACAGTACTCCTACACGCTCTGCTCAACAAGCACAACAC
TCAACGCTACAACCCAGGCGATCTCAACGCAATAAGAGAGTCCCTGGACA
CTTGATTGACTATGTGTTGAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063479-exon-scaffold_39-1491911889:23159..24360 | TCONS_00063479-exon-scaffold_39-1491911889:23159..24360 | Clytia hemisphaerica | exon |
| TCONS_00063479-exon-scaffold_39-1510915933:23159..24360 | TCONS_00063479-exon-scaffold_39-1510915933:23159..24360 | Clytia hemisphaerica | exon |
| TCONS_00063479-exon-scaffold_39-1575043694:23159..24360 | TCONS_00063479-exon-scaffold_39-1575043694:23159..24360 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:23159..24360 . |
Blast
The following BLAST results are available for this feature:
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