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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063452 ID=TCONS_00063452|Name=TCONS_00063452|organism=Clytia hemisphaerica|type=transcript|length=802bp
GGAGTCAACGAAACAGATATCCAAAAAATCAAGAACGTGAATGTCGTGTT
CCACCGAGAAGAAAACATTGACAATGTAAAAGTGAATacagaaagtttga
aaaattctcTACACCCTGTCATTGAACTTGTATCAACTTCCAAAGAATTC
GatAGTGGAGCAGAACATTTGCAATTATTGACAAGTCATGCTGGTTACAA
TGGGGAAACGGTATCAATAATATCACGTATCATTTTCCCTAACGACGGTA
AATCGCGCTCCGTAACGTCATTTGTTATCCATTTTGACGAAGAGGACGTC
AGCCCGAGACGTCAATTAGCGACCGGAAACCGAGACGATTTCAACATCGT
GAATAGCGTACCGGAGAAAGATAGATACACGGCAAGTTTTGAGTCTATAC
CTGGAGGAGAATCAATTTATAATCTGACAATCTCACCATTGCTGTATAAA
GATGATATGGTGAAATTGGaggctgttttgtttttcgaCGAAGATGGAAA
ATTCACGAATGAGCAAGCACACACTATACTGCTTGTCAGAGGGGGGCCGT
ATTTCTGCGATGAAACAACCATTGAGAATTCATACAACATCTCCTCAACA
GAAGAAACACCTGtgacaaaaacattcgaatttacTGTCTGTGGTAATCC
ATCACCGAAAGTGGCTGCATTCTGGGGTGAAAAGCCATTGCAATTGACTA
AATCAAACACAAGATCCACCAATGAATTTTCCACAAAACTTTCGCTAAGC
ATTAAGGGTATTGAAGCAAAGGACTGTGGGAAAAAATTGTCTTTAATGAT
GG Run BLAST on NCBI protein sequence of TCONS_00063452-protein >TCONS_00063452-protein ID=TCONS_00063452-protein|Name=TCONS_00063452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
GVNETDIQKIKNVNVVFHREENIDNVKVNTESLKNSLHPVIELVSTSKEF
DSGAEHLQLLTSHAGYNGETVSIISRIIFPNDGKSRSVTSFVIHFDEEDV
SPRRQLATGNRDDFNIVNSVPEKDRYTASFESIPGGESIYNLTISPLLYK
DDMVKLEAVLFFDEDGKFTNEQAHTILLVRGGPYFCDETTIENSYNISST
EETPVTKTFEFTVCGNPSPKVAAFWGEKPLQLTKSNTRSTNEFSTKLSLS
IKGIEAKDCGKKLSLMM Run BLAST on NCBI transcript from alignment at scaffold_39:232198..234275+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063452 ID=TCONS_00063452|Name=TCONS_00063452|organism=Clytia hemisphaerica|type=transcript|length=2078bp|location=Sequence derived from alignment at scaffold_39:232198..234275+ (Clytia hemisphaerica)
GGAGTCAACGAAACAGATATCCAAAAAATCAAGAACGTGAATGTCGTGTT
CCACCGAGAAGAAAACATTGACAATGTAAAAGTGAATacagaaagtttga
aaaattctcTACACCCTGTCATTGAACTTGTATCAACTTCCAAAGAATTC
GGTGAGTTTAGTAGGATACCAGTTGTATAAAcgtaaaattttctgaaata
ttcttctaagaaggttttcttttgaaaactttctttcctctttccttttt
tctttttccatttttcttttcccTTTTACCTTATTCGGGACTTCAGGGAA
GAATGTATTCTATGATATTTTGGTGATCGCTACAAACAATAGGTTATTAG
CAGAAGAGAATGGGTCAAATGTCAAGGAATGTTATAAATGTTATTGAAAG
TTTCACAAACTGAAGTaaattcccgggggggggcactgggtttgcggact
gacggtatgtgcgggccaaaaattggcttttaaaattgcacccttacagt
gcagcaaaaatcagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNctctagtttttccgacccttacagtgcattttaaacatattg
gaaaaggtacccttaggacccgcacatacccgtcggtccttttgcccagc
tgccccccctgGGAGtaaattagacaattttttctttttcatagatAGTG
GAGCAGAACATTTGCAATTATTGACAAGTCATGCTGGTTACAATGGGGAA
ACGGTATCAATAATATCACGTATCATTTTCCCTAACGACGGTAAATCGCG
CTCCGTAACGTCATTTGTTATCCATTTTGACGAAGAGGACGTCAGCCCGA
GACGTCAATTAGCGACCGGAAACCGAGACGATTTCAACATCGTGAATAGC
GTACCGGAGAAAGATAGATACACGGCAAGTTTTGAGTCTATACCTGGAGG
AGAATCAATTTATAATCTGACAATCTCACCATTGCTGTATAAAGATGATA
TGGTGAAATTGGaggctgttttgtttttcgaCGAAGATGGAAAATTCACG
AATGAGCAAGCACACACTATACTGCTTGTCAGAGGTAGGTATTGAAATTC
AaaggaaaaaaacaataaatcaCACGCGTGTGAAAGCTATCATTACTGCA
CAGAAATTTTCAGTCGGCGTGGGATTTTATTGAAAGGGCCTCATCCTGGA
GTATAGAGGAAGGGGAAGGTTGAGGTACCACTTGGAAGGTTACCTTATTC
AAGCTCTGAATTTCTGAAATCATCTTTGGTCGGTCAAGGTTATTGCCTCC
GTGGAAGGAATTGGGGAATCGGCTTTACACGTTTTTACAACGTTTCTTAA
TCTACCGACTTTTTACAAGGCTTATTATTTCTAGCTACATGAACTCGATC
TTTTGGGATtggttttttttgtcaaaataatgaAATCTAAACCTTCCAAA
TTTCTTTCTACCCATAGGGGGGCCGTATTTCTGCGATGAAACAACCATTG
AGAATTCATACAACATCTCCTCAACAGAAGAAACACCTGtgacaaaaaca
ttcgaatttacTGTCTGTGGTAATCCATCACCGAAAGTGGCTGCATTCTG
GGGTGAAAAGCCATTGCAATTGACTAAATCAAACACAAGATCCACCAATG
AATTTTCCACAAAACTTTCGCTAAGCATTAAGGGTATTGAAGCAAAGGAC
TGTGGGAAAAAATTGTCTTTAATGATGG Coding sequence (CDS) from alignment at scaffold_39:232198..234275+ >TCONS_00063452 ID=TCONS_00063452|Name=TCONS_00063452|organism=Clytia hemisphaerica|type=CDS|length=2403bp|location=Sequence derived from alignment at scaffold_39:232198..234275+ (Clytia hemisphaerica)
GGAGTCAACGAAACAGATATCCAAAAAATCAAGAACGTGAATGTCGTGTT
CCACCGAGAAGAAAACATTGACAATGTAAAAGTGAATacagaaagtttga
aaaattctcTACACCCTGTCATTGAACTTGTATCAACTTCCAAAGAATTC
GatAGTGGAGCAGAACATTTGCAATTATTGACAAGTCATGCTGGTTACAA
TGGGGAAACGGTATCAATAATATCACGTATCATTTTCCCTAACGACGGTA
AATCGCGCTCCGTAACGTCATTTGTTATCCATTTTGACGAAGAGGACGTC
AGCCCGAGACGTCAATTAGCGACCGGAAACCGAGACGATTTCAACATCGT
GAATAGCGTACCGGAGAAAGATAGATACACGGCAAGTTTTGAGTCTATAC
CTGGAGGAGAATCAATTTATAATCTGACAATCTCACCATTGCTGTATAAA
GATGATATGGTGAAATTGGaggctgttttgtttttcgaCGAAGATGGAAA
ATTCACGAATGAGCAAGCACACACTATACTGCTTGTCAGAGGGGGGCCGT
ATTTCTGCGATGAAACAACCATTGAGAATTCATACAACATCTCCTCAACA
GAAGAAACACCTGtgacaaaaacattcgaatttacTGTCTGTGGTAATCC
ATCACCGAAAGTGGCTGCATTCTGGGGTGAAAAGCCATTGCAATTGACTA
AATCAAACACAAGATCCACCAATGAATTTTCCACAAAACTTTCGCTAAGC
ATTAAGGGTATTGAAGCAAAGGACTGTGGGAAAAAATTGTCTTTAATGAT
GGGAGTCAACGAAACAGATATCCAAAAAATCAAGAACGTGAATGTCGTGT
TCCACCGAGAAGAAAACATTGACAATGTAAAAGTGAATacagaaagtttg
aaaaattctcTACACCCTGTCATTGAACTTGTATCAACTTCCAAAGAATT
CGatAGTGGAGCAGAACATTTGCAATTATTGACAAGTCATGCTGGTTACA
ATGGGGAAACGGTATCAATAATATCACGTATCATTTTCCCTAACGACGGT
AAATCGCGCTCCGTAACGTCATTTGTTATCCATTTTGACGAAGAGGACGT
CAGCCCGAGACGTCAATTAGCGACCGGAAACCGAGACGATTTCAACATCG
TGAATAGCGTACCGGAGAAAGATAGATACACGGCAAGTTTTGAGTCTATA
CCTGGAGGAGAATCAATTTATAATCTGACAATCTCACCATTGCTGTATAA
AGATGATATGGTGAAATTGGaggctgttttgtttttcgaCGAAGATGGAA
AATTCACGAATGAGCAAGCACACACTATACTGCTTGTCAGAGGGGGGCCG
TATTTCTGCGATGAAACAACCATTGAGAATTCATACAACATCTCCTCAAC
AGAAGAAACACCTGtgacaaaaacattcgaatttacTGTCTGTGGTAATC
CATCACCGAAAGTGGCTGCATTCTGGGGTGAAAAGCCATTGCAATTGACT
AAATCAAACACAAGATCCACCAATGAATTTTCCACAAAACTTTCGCTAAG
CATTAAGGGTATTGAAGCAAAGGACTGTGGGAAAAAATTGTCTTTAATGA
TGGGAGTCAACGAAACAGATATCCAAAAAATCAAGAACGTGAATGTCGTG
TTCCACCGAGAAGAAAACATTGACAATGTAAAAGTGAATacagaaagttt
gaaaaattctcTACACCCTGTCATTGAACTTGTATCAACTTCCAAAGAAT
TCGatAGTGGAGCAGAACATTTGCAATTATTGACAAGTCATGCTGGTTAC
AATGGGGAAACGGTATCAATAATATCACGTATCATTTTCCCTAACGACGG
TAAATCGCGCTCCGTAACGTCATTTGTTATCCATTTTGACGAAGAGGACG
TCAGCCCGAGACGTCAATTAGCGACCGGAAACCGAGACGATTTCAACATC
GTGAATAGCGTACCGGAGAAAGATAGATACACGGCAAGTTTTGAGTCTAT
ACCTGGAGGAGAATCAATTTATAATCTGACAATCTCACCATTGCTGTATA
AAGATGATATGGTGAAATTGGaggctgttttgtttttcgaCGAAGATGGA
AAATTCACGAATGAGCAAGCACACACTATACTGCTTGTCAGAGGGGGGCC
GTATTTCTGCGATGAAACAACCATTGAGAATTCATACAACATCTCCTCAA
CAGAAGAAACACCTGtgacaaaaacattcgaatttacTGTCTGTGGTAAT
CCATCACCGAAAGTGGCTGCATTCTGGGGTGAAAAGCCATTGCAATTGAC
TAAATCAAACACAAGATCCACCAATGAATTTTCCACAAAACTTTCGCTAA
GCATTAAGGGTATTGAAGCAAAGGACTGTGGGAAAAAATTGTCTTTAATG
ATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063452-exon-scaffold_39-1491911889:232198..232348 | TCONS_00063452-exon-scaffold_39-1491911889:232198..232348 | Clytia hemisphaerica | exon |
| TCONS_00063452-exon-scaffold_39-1510915933:232198..232348 | TCONS_00063452-exon-scaffold_39-1510915933:232198..232348 | Clytia hemisphaerica | exon |
| TCONS_00063452-exon-scaffold_39-1575043694:232198..232348 | TCONS_00063452-exon-scaffold_39-1575043694:232198..232348 | Clytia hemisphaerica | exon |
| TCONS_00063452-exon-scaffold_39-1491911889:233242..233631 | TCONS_00063452-exon-scaffold_39-1491911889:233242..233631 | Clytia hemisphaerica | exon |
| TCONS_00063452-exon-scaffold_39-1510915933:233242..233631 | TCONS_00063452-exon-scaffold_39-1510915933:233242..233631 | Clytia hemisphaerica | exon |
| TCONS_00063452-exon-scaffold_39-1575043694:233242..233631 | TCONS_00063452-exon-scaffold_39-1575043694:233242..233631 | Clytia hemisphaerica | exon |
| TCONS_00063452-exon-scaffold_39-1491911889:234015..234275 | TCONS_00063452-exon-scaffold_39-1491911889:234015..234275 | Clytia hemisphaerica | exon |
| TCONS_00063452-exon-scaffold_39-1510915933:234015..234275 | TCONS_00063452-exon-scaffold_39-1510915933:234015..234275 | Clytia hemisphaerica | exon |
| TCONS_00063452-exon-scaffold_39-1575043694:234015..234275 | TCONS_00063452-exon-scaffold_39-1575043694:234015..234275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:232198..234275 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013783 | Ig-like_fold |
Blast
The following BLAST results are available for this feature:
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