|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063451 ID=TCONS_00063451|Name=TCONS_00063451|organism=Clytia hemisphaerica|type=transcript|length=648bp
GAGCCGTTTCTGTCTGCACCAAAAGAAGTGAAGAAAGTGTTAACTGGGAA
CCCACAAGACAACCAAGTATCAATCCCATTCACCTTCGAAGCGCGCAATA
CAACATCGACCGCTCGCCATCTCCGATCACTCGTTATCAGGGATgagaaa
aatcaagaaatagCTTACGGCACACCAACATCATTTGTCGCCCGAAATGT
ATCACGCTTTGAGAACCGGTTAACTGTATCCCGATCGGGAAATCAGTACG
TTTTGAAAATACAAGATTTGAGAATAAGTGATGAGGCAAGATTTACTGCA
CATGCGTTGTTCGAGGAAATAAATGGAACAGATGTAGAATCGAAATATTT
TGTTGATAAAGCAATCGTGGATTTGATTACTCAAGGACCACCTCGACATT
GCAATCGAATCGAATCAAATATTCTACCGTACAACATCACTCGATTGAAT
CGATACCATACGTATATTTGTGGCAACCCTCGACCTGATGTCACGATAAA
ACAAGGTGATCAAGAAATCGTAATTCGAGATATAATCGAAGATTCAAGCG
AGAAACATCGATATCGATACACATTTGATTTAACCGATTTGAAAGCGGAG
GATTGTGGATCGGATGTTGTAGTAACTGCAAACGGAAATGGTGCAGAG Run BLAST on NCBI protein sequence of TCONS_00063451-protein >TCONS_00063451-protein ID=TCONS_00063451-protein|Name=TCONS_00063451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
EPFLSAPKEVKKVLTGNPQDNQVSIPFTFEARNTTSTARHLRSLVIRDEK
NQEIAYGTPTSFVARNVSRFENRLTVSRSGNQYVLKIQDLRISDEARFTA
HALFEEINGTDVESKYFVDKAIVDLITQGPPRHCNRIESNILPYNITRLN
RYHTYICGNPRPDVTIKQGDQEIVIRDIIEDSSEKHRYRYTFDLTDLKAE
DCGSDVVVTANGNGAE Run BLAST on NCBI transcript from alignment at scaffold_39:229513..230999+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063451 ID=TCONS_00063451|Name=TCONS_00063451|organism=Clytia hemisphaerica|type=transcript|length=1487bp|location=Sequence derived from alignment at scaffold_39:229513..230999+ (Clytia hemisphaerica)
GAGCCGTTTCTGTCTGCACCAAAAGAAGTGAAGAAAGTGTTAACTGGGAA
CCCACAAGACAACCAAGTATCAATCCCATTCACCTTCGAAGCGCGCAATA
CAACATCGACCGCTCGCCATCTCCGATCACTCGTTATCAGGGATgagaaa
aatcaagaaatagCTTACGGCACACCAACATCATTTGTCGCCCGAAATGT
ATCACGCTTTGAGAACCGGTTAACTGTATCCCGATCGGGAAATCAGTACG
TTTTGAAAATACAAGATTTGAGAATAAGTGATGAGGCAAGATTTACTGCA
CATGCGTTGTTCGAGGAAATAAATGGAACAGATGTAGAATCGAAATATTT
TGTTGATAAAGCAATCGTGGATTTGATTACTCAAGGTAGGTTTATTCTAC
TCTAGTCTCTTCAGCtcaacctctataactcgaatgtctccttaacttgt
ATAAGTTTTCTCGTccattcagttaacaatgctttaAAATCCTTACTTTA
TAACTCAAACCTGAAATTTCCTTAGCTCGAATAAACTTGTGTTACACCTG
TTtgcgttcgagttatggagactccattgtATTTCAAATTGATCAAAATG
GTAGAAGTATGCACTGCTAAGGGAAAACTACACCTCGAGTTTAAAACTGG
ACAGCTGGTACAAACCTTACCTAACATATTTTTTGAGTTCCTCTTTTTGG
TACACCCCTGCTAACATTGGACATTCCAAAGTCATTAAattcaaattcca
aaaaaacgtGCATACTTTGTTGAAGATGTACTTTATTTTACTTAAAAGCA
AACGGGTGGTTATTAACAACATTAACAGAATTACCAGAATTTGATCTAAA
AGTGCGTGGTATTCCATAGGGTTACAGTTTTTTCAGTTGGATAATTTAAA
TGTCCCAAAAGTTGGATCTCCTCAATAGGGGTATACTGTTTTATCTAGAA
AAGTCACTACGCTTTATATAGACTTTGAATGCAGTTTctcggccaagcaa
aatatttcgaTCGGAgttcttttgaaagttttatccgcatcgagagcgct
agatctacttcgCTTGCACATAAGTGATGTAGTAacgtttgtcgttaggc
aatGTTTTAAAACTGCAATGGCTTATATGCGGgtaacactttcaaaaaaa
ctccgatcaaagatggcggatagaGCTTGGTacagggtttataaaggtca
aCAAGAAAAGCACATTTTCAATAGGACCACCTCGACATTGCAATCGAATC
GAATCAAATATTCTACCGTACAACATCACTCGATTGAATCGATACCATAC
GTATATTTGTGGCAACCCTCGACCTGATGTCACGATAAAACAAGGTGATC
AAGAAATCGTAATTCGAGATATAATCGAAGATTCAAGCGAGAAACATCGA
TATCGATACACATTTGATTTAACCGATTTGAAAGCGGAGGATTGTGGATC
GGATGTTGTAGTAACTGCAAACGGAAATGGTGCAGAG Coding sequence (CDS) from alignment at scaffold_39:229513..230999+ >TCONS_00063451 ID=TCONS_00063451|Name=TCONS_00063451|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_39:229513..230999+ (Clytia hemisphaerica)
GAGCCGTTTCTGTCTGCACCAAAAGAAGTGAAGAAAGTGTTAACTGGGAA
CCCACAAGACAACCAAGTATCAATCCCATTCACCTTCGAAGCGCGCAATA
CAACATCGACCGCTCGCCATCTCCGATCACTCGTTATCAGGGATgagaaa
aatcaagaaatagCTTACGGCACACCAACATCATTTGTCGCCCGAAATGT
ATCACGCTTTGAGAACCGGTTAACTGTATCCCGATCGGGAAATCAGTACG
TTTTGAAAATACAAGATTTGAGAATAAGTGATGAGGCAAGATTTACTGCA
CATGCGTTGTTCGAGGAAATAAATGGAACAGATGTAGAATCGAAATATTT
TGTTGATAAAGCAATCGTGGATTTGATTACTCAAGGACCACCTCGACATT
GCAATCGAATCGAATCAAATATTCTACCGTACAACATCACTCGATTGAAT
CGATACCATACGTATATTTGTGGCAACCCTCGACCTGATGTCACGATAAA
ACAAGGTGATCAAGAAATCGTAATTCGAGATATAATCGAAGATTCAAGCG
AGAAACATCGATATCGATACACATTTGATTTAACCGATTTGAAAGCGGAG
GATTGTGGATCGGATGTTGTAGTAACTGCAAACGGAAATGGTGCAGAGGA
GCCGTTTCTGTCTGCACCAAAAGAAGTGAAGAAAGTGTTAACTGGGAACC
CACAAGACAACCAAGTATCAATCCCATTCACCTTCGAAGCGCGCAATACA
ACATCGACCGCTCGCCATCTCCGATCACTCGTTATCAGGGATgagaaaaa
tcaagaaatagCTTACGGCACACCAACATCATTTGTCGCCCGAAATGTAT
CACGCTTTGAGAACCGGTTAACTGTATCCCGATCGGGAAATCAGTACGTT
TTGAAAATACAAGATTTGAGAATAAGTGATGAGGCAAGATTTACTGCACA
TGCGTTGTTCGAGGAAATAAATGGAACAGATGTAGAATCGAAATATTTTG
TTGATAAAGCAATCGTGGATTTGATTACTCAAGGACCACCTCGACATTGC
AATCGAATCGAATCAAATATTCTACCGTACAACATCACTCGATTGAATCG
ATACCATACGTATATTTGTGGCAACCCTCGACCTGATGTCACGATAAAAC
AAGGTGATCAAGAAATCGTAATTCGAGATATAATCGAAGATTCAAGCGAG
AAACATCGATATCGATACACATTTGATTTAACCGATTTGAAAGCGGAGGA
TTGTGGATCGGATGTTGTAGTAACTGCAAACGGAAATGGTGCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063451-exon-scaffold_39-1491911889:229513..229897 | TCONS_00063451-exon-scaffold_39-1491911889:229513..229897 | Clytia hemisphaerica | exon |
| TCONS_00063451-exon-scaffold_39-1510915933:229513..229897 | TCONS_00063451-exon-scaffold_39-1510915933:229513..229897 | Clytia hemisphaerica | exon |
| TCONS_00063451-exon-scaffold_39-1575043694:229513..229897 | TCONS_00063451-exon-scaffold_39-1575043694:229513..229897 | Clytia hemisphaerica | exon |
| TCONS_00063451-exon-scaffold_39-1491911889:230737..230999 | TCONS_00063451-exon-scaffold_39-1491911889:230737..230999 | Clytia hemisphaerica | exon |
| TCONS_00063451-exon-scaffold_39-1510915933:230737..230999 | TCONS_00063451-exon-scaffold_39-1510915933:230737..230999 | Clytia hemisphaerica | exon |
| TCONS_00063451-exon-scaffold_39-1575043694:230737..230999 | TCONS_00063451-exon-scaffold_39-1575043694:230737..230999 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:229513..230999 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013783 | Ig-like_fold |
Blast
The following BLAST results are available for this feature:
|
