TCONS_00063444 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063444
Unique NameTCONS_00063444
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063444 ID=TCONS_00063444|Name=TCONS_00063444|organism=Clytia hemisphaerica|type=transcript|length=525bp
GCTTCAACTGACAGACCTACAAAACGAAGAAAATATCGTGGTTCTCACGC
TTGTGCATGAAGTGCGTACTAACTTAGTTCACGCGCTCGAATATATCCCG
TTGAAAAACGTACCGGCAGAACCTACATCGTGGGCGGTGCGTGCCCGATC
GCAAGTTATCACGTTTTTAAATCAGATCGCTCAAACAATCGCTCAAAGAG
GTAATTACTTACAGTCTCtgatttttcaatgaaattacaatGGTTTATTT
TTACAGCACCCAGCCACAGTGCgcaaggtcgtgggttcaatccctagccg
ggtcataccaaccATGCCACCTCTCTGCTTGGTGTTTAGCAATTAATGGT
ATGATCAGGGGTAAGTGGAGTAATCCTGGAAGAAAGCCAGGCGCCCTCTC
ATACCTTCGGGCCACCCCCTACTGCGCTCGCAATTTTACTTAGAATGGTT
AATTCCCAATGAAACAGCGGAAAGGCtcacaattcatgatattcatgacg
taatgttttctacggaaatatcCCG
Run BLAST on NCBI

transcript from alignment at scaffold_39:196028..196552+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063444 ID=TCONS_00063444|Name=TCONS_00063444|organism=Clytia hemisphaerica|type=transcript|length=525bp|location=Sequence derived from alignment at scaffold_39:196028..196552+ (Clytia hemisphaerica)
GCTTCAACTGACAGACCTACAAAACGAAGAAAATATCGTGGTTCTCACGC
TTGTGCATGAAGTGCGTACTAACTTAGTTCACGCGCTCGAATATATCCCG
TTGAAAAACGTACCGGCAGAACCTACATCGTGGGCGGTGCGTGCCCGATC
GCAAGTTATCACGTTTTTAAATCAGATCGCTCAAACAATCGCTCAAAGAG
GTAATTACTTACAGTCTCtgatttttcaatgaaattacaatGGTTTATTT
TTACAGCACCCAGCCACAGTGCgcaaggtcgtgggttcaatccctagccg
ggtcataccaaccATGCCACCTCTCTGCTTGGTGTTTAGCAATTAATGGT
ATGATCAGGGGTAAGTGGAGTAATCCTGGAAGAAAGCCAGGCGCCCTCTC
ATACCTTCGGGCCACCCCCTACTGCGCTCGCAATTTTACTTAGAATGGTT
AATTCCCAATGAAACAGCGGAAAGGCtcacaattcatgatattcatgacg
taatgttttctacggaaatatcCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039764XLOC_039764Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063444-exon-scaffold_39-1491911889:196028..196552TCONS_00063444-exon-scaffold_39-1491911889:196028..196552Clytia hemisphaericaexon
TCONS_00063444-exon-scaffold_39-1510915933:196028..196552TCONS_00063444-exon-scaffold_39-1510915933:196028..196552Clytia hemisphaericaexon
TCONS_00063444-exon-scaffold_39-1575043694:196028..196552TCONS_00063444-exon-scaffold_39-1575043694:196028..196552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:196028..196552 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.635029	0.715285	0.305882	0.124596	0	0.139854	0	0	0	0.112907	0.30054	0.734613	0	0	0	0	0.206211	0	0	0	0	0.362456	0.491856	0.109304	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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