|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063440 ID=TCONS_00063440|Name=TCONS_00063440|organism=Clytia hemisphaerica|type=transcript|length=1003bp
CAAGGTTTCTCTGTAAAATAAACACAAAAATGATTAATGGTGGAGTAATA
AATAATATTTTGGCCTTATATTTCTTCATCAATGTAATTCAATATGGCGA
ACCAGAAATGTTACGAAGGGTGGATGTAAGCACTGTCAACAACAAAGTTG
AGTATGGTTACGTTAGTATGGTAACGCACGATAACCACATTCTCAATGTG
ACAGCAATCAACATATCATACCACAAAACTTCCCAAGAATGCATTCGAAC
TTGTCTCAATTTTACAAATTGTTGGAGCATCAATTTGAAGAAACAGCAAA
ATAATGAGATTTACGAATGTCATATTTTGGATACTGATCGATTTCGAAAc
gcgtcaaattttgtttcttcctCTACAGgaaattctcatttttctcttga
tCATGATTGTGAATGGAAGGAGACATGCATCAACCCGAACAAAATATGTA
TTCCAAACTACTCTGATGGTTCTTATGAATGTGTTTGCGAGCCTATTGGT
AAATACGACATTCATTGCATAAACAGAAACATTGCATTTCAAAGACCAGT
CACTTTATCGAGACTAGATCCGACTTCTGGGAAACCGGCGTTTGTTACCG
ATGGTTATAAAGGAGAAATATGTAATGATTTCTCAACCAATCTTGTCCAC
TCGAAAATGGGAACTATGGAAATTTGGCTGAGAATTGATTTGGGTGGAat
gaaacaaattaaatttattgatattttcGATCGTACAATAGGAGCACCTC
ATCATCAACGACTTGCTTTTACAGATATTATTGTGTATGGTCAGAATCCT
ATTGATAATCGTCAGCTTTGCAGTACTATAACATTGCAAGATACTGAAAA
TGGTGATAAGGTTTTTAAAGTTTGTAACGAGGTTTTGACTGGGAGTGGAG
TTGAGTTATACAAGGCCCCCGGTACATGGCAAATGATACATCTTTGTGAA
ATAGCTGTGTACGGACCTACAAATTGAACTTCATTAATTTTACTATATCA
TAC Run BLAST on NCBI transcript from alignment at scaffold_39:109372..112998+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063440 ID=TCONS_00063440|Name=TCONS_00063440|organism=Clytia hemisphaerica|type=transcript|length=3627bp|location=Sequence derived from alignment at scaffold_39:109372..112998+ (Clytia hemisphaerica)
CAAGGTTTCTCTGTAAAATAAACACAAAAATGATTAATGGTGGAGTAATA
AATAATATTTTGGCCTTATATTTCTTCATCAATGTAATTCAATATGGCGA
ACCAGAAATGTTACGAAGGGTGGATGTAAGCACTGTCAACAACAAAGGTG
AGATACTTCGTTTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNtttttttttttataagaacgtcaaaa
attttcgaagccttcggatgttcttagttttttggatttgaagcctaaaa
atgttcttaaaatgttcttattttcggctttttttgagcattttgatgta
atttcttaagaaaatgcatgtttttaagtctccaaagccttataatgttc
ttagaatgttcttaaatttttgggcctcgaagccttatgttcttatatag
tttgttcttataaaaaaaaaacgtgtacttcgTTTATTTAACTCATATTT
TACTTAGTCGTACAcatttacacccctttctcacagcccCGTTAGGAATT
TTTTCAGACAACGGGGATAAAAAAAACGTACTGacaaaactcaatgggga
ttgatattcacatagtttttatggctagggatttcaattcttttgttttc
aagtcataaacttcggtggggatgggaaaaatggtAAANtttgttttcaa
gtcataaacttcagtggggatgggaaaaatggtAAATATTTATTtcgcag
tgaggattggtttgtttgattattttcactgggaacgatattttggccaa
ttcttccagtgggaaggggttctagtgggtctgtgaaaaggggttGTACA
TTTATGCTGTCTCAAGGTGCGTTAGTCAACAAGTTTGAAAAACCATAGTC
TAATAAAAAATCCACGGTTTGGGAGTCTTTTATTTCTTTCTAACaacccc
ttttcacagacctgTTAGgattttttagccagtgggggTGAAATCAACGG
ATTCAATCGGAATTGAGATTGATGTTCCTATGTTTTTTATGAATTCCATT
GTCTGTTTTCAAggcagaaaattcagtggaaatggaaaaaaagcacaata
ttttgtagtgaggatttgtttatttgattattaccAGCGGCGACAAAAAT
TGGggtataattttccattgggaacgatattttggctTATCTTTCCAGTC
AGagggggtcccagcgggtctgtgaaaaACAGGTGTATCTTATCATTGAA
TTACTTATAAAAGTTCAAATCAATCTTTTAACTATTGTTTcactgaaaaa
ctgaaaactggtttctacaaaacatcactgcTAGGGAGAAAACTATAGAT
agcgtactttcaacacaaaaagtttcagcctcaaatagaccttatcggag
tttttgatttttttaaaaaagcaatgcattgtaggattgtttcgagtgta
ttacaatagaaatctcttaggaattcctgaAGGGGATTATATTGTAatga
tatgcataagtcaagatgacgttatatttttaacggaagcacccgaaaaa
GCCAGTTTATGACCtatgtgtttctatttttagtaacagagaggggtCGA
ATaccggcttttttagggtgtttccgctagaaaaatgacttacacatatc
aagaatacactcgaaacaatgcatcgcttttttagaaaaatcaaaactcc
gataaggtctatttacCTAAATTTTCAGAGAGAGGGTACCTTTTTTTGCA
GGTTTTAAATGGTATCCATACTGGTAATAGTATTATTCTCTTTCAGTTGA
GTATGGTTACGTTAGTATGGTAACGCACGATAACCACATTCTCAATGTGA
CAGCAATCAACATATCATACCACAAAACTTCCCAAGAATGCATTCGAACT
TGTCTCAATTTTACAAATTGTTGGAGCATCAATTTGAAGAAACAGCAAAA
TAATGAGATTTACGAATGTCATATTTTGGATACTGATCGATTTCGAAAcg
cgtcaaattttgtttcttcctCTACAGgaaattctcatttttctcttgat
gtgagtaaaataataaattatcaAACTAGTTCCCAGTCCTTTTGATGTGC
TAACGtcatcagtaaaataaaaaagtaatgacCCACCTTTTATTTTATAC
AAGAGCCGAAATTCCACCAGGGTAATCATAAAGATTTTTATGTTCCAAAG
TTTTTGGAAGTTTTGACTACTTTAAGCAAATAAGCCGACATTTCCTCACC
AGTAGGAACAGACTTCTGTCATTTTCTTGGTAAAAActttctttgttatt
tttacaGCATGATTGTGAATGGAAGGAGACATGCATCAACCCGAACAAAA
TATGTATTCCAAACTACTCTGATGGTTCTTATGAATGTGTTTGCGAGCCT
ATTGGTAAATACGACATTCATTGCATAAGTAAGTATTTTCAATGAGATAA
AATGAATTAAGGCTGTCATATTCCGAAAACTTTTTGTTGACAATTTTAAG
ATGAACAGTAAGATTCAGTATAGAACAAAtctatttcaatttttgaaaga
agCACTCTCCCATTTTGCTTTTACGAGATTCGCTAGTTTTGTGTGCTCTG
ACTCAAGATCTTGTACCAGTTGTCATACATACTTTGCTCTCCGATGAATT
AAACTTTCCTCCGCTATAATCATACACTGTGATATGCTATTCATGGTATG
AGATAACGTATCCATGACAAATGGTACAAAATTTTCGATCTACAGTTATT
TAATGGATTTCTAATTATATAAGGATATGTGTATTAGGTTCTGAGATTAC
TTGATTTCACTAAATCTTTCCTATGTTTCTTATTCGTGATTTGATTCCTA
CGGTTTTCATCCATCCATTCTGGATGATTGTTATGGTTACTTTTCTTGTG
CGATAAGTGAAATGGTTCGATTGAAGGGGTTTCAAGGAAATAGAGGAGAA
ACAGCTCAGGGGTACAAAAACTATTTTACTCGGTTTTCACAGCTCACAAT
CCAACCCTTACTCCGTATATCCCAGGCTTTCTTTATGTTCCTGATGGGTG
CTAGAGCGTATGTATATTATCTGGAGCTATCAGTACGCATCATCAAGCCG
ATAATACACTGTTCATTCACGATCACCAATATATATCTCTTTTCAGACAG
AAACATTGCATTTCAAAGACCAGTCACTTTATCGAGACTAGATCCGACTT
CTGGGAAACCGGCGTTTGTTACCGATGGTTATAAAGGAGAAATATGTAAT
GATTTCTCAACCAATCTTGTCCACTCGAAAATGGGAACTATGGAAATTTG
GCTGAGAATTGATTTGGGTGGAatgaaacaaattaaatttattgatattt
tcGATCGTACAATAGGAGCACCTCATCATCAACGACTTGCTTTTACAGAT
ATTATTGTGTATGGTCAGAATCCTATTGATAATCGTCAGCTTTGCAGTAC
TATAACATTGCAAGATACTGAAAATGGTGATAAGGTTTTTAAAGTTTGTA
ACGAGGTTTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCCGGTACA
TGGCAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAATTG
AACTTCATTAATTTTACTATATCATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063440-exon-scaffold_39-1491911889:109372..109518 | TCONS_00063440-exon-scaffold_39-1491911889:109372..109518 | Clytia hemisphaerica | exon |
| TCONS_00063440-exon-scaffold_39-1510915933:109372..109518 | TCONS_00063440-exon-scaffold_39-1510915933:109372..109518 | Clytia hemisphaerica | exon |
| TCONS_00063440-exon-scaffold_39-1575043694:109372..109518 | TCONS_00063440-exon-scaffold_39-1575043694:109372..109518 | Clytia hemisphaerica | exon |
| TCONS_00063440-exon-scaffold_39-1491911889:111168..111421 | TCONS_00063440-exon-scaffold_39-1491911889:111168..111421 | Clytia hemisphaerica | exon |
| TCONS_00063440-exon-scaffold_39-1510915933:111168..111421 | TCONS_00063440-exon-scaffold_39-1510915933:111168..111421 | Clytia hemisphaerica | exon |
| TCONS_00063440-exon-scaffold_39-1575043694:111168..111421 | TCONS_00063440-exon-scaffold_39-1575043694:111168..111421 | Clytia hemisphaerica | exon |
| TCONS_00063440-exon-scaffold_39-1491911889:111679..111799 | TCONS_00063440-exon-scaffold_39-1491911889:111679..111799 | Clytia hemisphaerica | exon |
| TCONS_00063440-exon-scaffold_39-1510915933:111679..111799 | TCONS_00063440-exon-scaffold_39-1510915933:111679..111799 | Clytia hemisphaerica | exon |
| TCONS_00063440-exon-scaffold_39-1575043694:111679..111799 | TCONS_00063440-exon-scaffold_39-1575043694:111679..111799 | Clytia hemisphaerica | exon |
| TCONS_00063440-exon-scaffold_39-1491911889:112518..112998 | TCONS_00063440-exon-scaffold_39-1491911889:112518..112998 | Clytia hemisphaerica | exon |
| TCONS_00063440-exon-scaffold_39-1510915933:112518..112998 | TCONS_00063440-exon-scaffold_39-1510915933:112518..112998 | Clytia hemisphaerica | exon |
| TCONS_00063440-exon-scaffold_39-1575043694:112518..112998 | TCONS_00063440-exon-scaffold_39-1575043694:112518..112998 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:109372..112998 + |
Blast
The following BLAST results are available for this feature:
|
