TCONS_00063436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063436
Unique NameTCONS_00063436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063436 ID=TCONS_00063436|Name=TCONS_00063436|organism=Clytia hemisphaerica|type=transcript|length=304bp
GTCCAAGACTATCTGAaggaaaaattgagaaaacgcTTTGTCAAGTCAGG
TGAGTGGCCCCCAGCCTCACCTGACTGCAATCCATTGGATTACCACTTCT
GGGACAAGGTGAAAGTCAAAGTGTACGAAGGTCGATTCAATCAACCATTT
GAAAACGAAGAACAGTTAAAAAGAAGGATAAGGAGAGTTTGGAATGAAAA
GGCTACTGATGTTGTTGAAATTCGGAAAGCATTAAAGCAATTTGTGCCTA
GGTTGAGACAGGTTGCCGAGAAAGAAGGAAATTATATCAAAATGACATTT
AAGN
Run BLAST on NCBI

protein sequence of TCONS_00063436-protein

>TCONS_00063436-protein ID=TCONS_00063436-protein|Name=TCONS_00063436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
VQDYLKEKLRKRFVKSGEWPPASPDCNPLDYHFWDKVKVKVYEGRFNQPF
ENEEQLKRRIRRVWNEKATDVVEIRKALKQFVPRLRQVAEKEGNYIKMTF
K
Run BLAST on NCBI

transcript from alignment at scaffold_389:27874..28177

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063436 ID=TCONS_00063436|Name=TCONS_00063436|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at scaffold_389:27874..28177 (Clytia hemisphaerica)
NCTTAAATGTCATTTTGATATAATTTCCTTCTTTCTCGGCAACCTGTCTC
AACCTAGGCACAAATTGCTTTAATGCTTTCCGAATTTCAACAACATCAGT
AGCCTTTTCATTCCAAACTCTCCTTATCCTTCTTTTTAACTGTTCTTCGT
TTTCAAATGGTTGATTGAATCGACCTTCGTACACTTTGACTTTCACCTTG
TCCCAGAAGTGGTAATCCAATGGATTGCAGTCAGGTGAGGCTGGGGGCCA
CTCACCTGACTTGACAAAgcgttttctcaatttttcctTCAGATAGTCTT
GGAC

Coding sequence (CDS) from alignment at scaffold_389:27874..28177

>TCONS_00063436 ID=TCONS_00063436|Name=TCONS_00063436|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_389:27874..28177 (Clytia hemisphaerica)
CTTAAATGTCATTTTGATATAATTTCCTTCTTTCTCGGCAACCTGTCTCA
ACCTAGGCACAAATTGCTTTAATGCTTTCCGAATTTCAACAACATCAGTA
GCCTTTTCATTCCAAACTCTCCTTATCCTTCTTTTTAACTGTTCTTCGTT
TTCAAATGGTTGATTGAATCGACCTTCGTACACTTTGACTTTCACCTTGT
CCCAGAAGTGGTAATCCAATGGATTGCAGTCAGGTGAGGCTGGGGGCCAC
TCACCTGACTTGACAAAgcgttttctcaatttttcctTCAGATAGTCTTG
GAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039759XLOC_039759Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063436-exon-scaffold_389-1491911889:27874..28177TCONS_00063436-exon-scaffold_389-1491911889:27874..28177Clytia hemisphaericaexon
TCONS_00063436-exon-scaffold_389-1510915933:27874..28177TCONS_00063436-exon-scaffold_389-1510915933:27874..28177Clytia hemisphaericaexon
TCONS_00063436-exon-scaffold_389-1575043694:27874..28177TCONS_00063436-exon-scaffold_389-1575043694:27874..28177Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063436-proteinTCONS_00063436-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_389supercontigscaffold_389:27874..28177 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.23872	3.27466	3.8022	2.06659	0	0.397615	0	0.449094	0.628843	0.778924	0.378021	0.745489	0.248151	0	0	0.682107	0.5602	0.861281	0	0.41505	0	0.52789	0.427813	1.55578	3.20482	0	2.04649	0.546017	0	1.26581
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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