TCONS_00063432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063432
Unique NameTCONS_00063432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063432 ID=TCONS_00063432|Name=TCONS_00063432|organism=Clytia hemisphaerica|type=transcript|length=3276bp
tcgcgagcagaaactctcaattttcttgaatttaaCCCCTTTCGTGAAAG
TAATGCCTTTGAAAATCCTGAGCCATATCGCGAAAGTTTATGGTCGCGAA
AAATGccttacaaaatagaaaatccgTAAAGATATCTAACTTAAGTAAAA
TGGAAGCTTTATGGCATTGCTTAGGCTGTTATAGCCTCAAAAGGCAATAG
ACAAAAGTTTATAAGAAGGTTAAAATTGGGCAGTTAAAAATACAATTGTT
TTTAGTGTAAATACTTGATTGCATCAATACACGCTGAGAAACTGTCATAA
TTTGGAACAGTTTAGGACACCCTGGGATTTTGAGAACAAACCATAGGCAA
GGCCCTCAAATAACAAATCCCAAAAAAGTCTGGAAAAGGGTTAAGTCTGA
AAGAGAATCATTTACTTAcctaaaataacaaaagaatgtATAGAAAAATG
TATGACAAAAAAACGACCTTACAATAGAATGCTCTGTCTTGAAATGAAAG
ACTACGTTTACCAAGAGCTACAAGAGAAATTTGTAAACACTTTGAGTTCA
AATTCTTAATATACAATGTGCTCGAAACAAAGCAGAACGGATTTTGAAGA
ATATAATCAGCTCATTTTAGGATAGAAGCTATTTTATCTAAAGATCTAAA
CATCTCCAACaggctttaaaaaaattttcagatacaCGGTAGcatacttt
ttaaaaagaaatttacttAAAACGAAGGTCTcgtgaaaacaaaaattcat
tttataaaatcaTTGCGGACTGTTGCGGACCTTATTTGATGTTTTCCATT
TCAAACGAGCTGAAGTTTGCGAAGAACACAAAACAAGAAAGGATTTTTGT
TATTTATGTTAAGATCGCTCAATATTATTTACATTTTCCAAAAtggcaaa
attaaaaatgtcaatAAAAATCTAGACGTCTCTGTTAAGCTCTTTCAATC
AATTTAGTTCGTTAAGTTTGTTTCAAATAAATACAAACCCTCTATTGTTC
TATTGCTATAGAGATCTAAGTTATCCCATTCACATAAGGTATGAAGTGCG
AAAATTCTTCACGGCAACACAGCTTTACGAGTTTTGTCATGAAGCAAATA
TAGGATCCCTTCAATTCAACGGTGAAGCTCCAATAAATTTGTCACTAGCT
ACTTTGTTTACTTAAAAGCGCCTTGGTCCGCCGCCAAAACTACGGCGATC
GCTACCGAAACTGTCTCTACGCCCCATTCGATCTCCTCCTCCACGTTGTC
GATCACGAGGCGGTCCTCGGCGATCTCCTCCTGGTGGTCCTCGTGCGTCG
CTGAATCGATCTCCACGATCTCTCTGTCGGTCACGTGGTGGACCACGGTC
ATCAAAATCACGCCCGCCGCCACCTCGACGCCCACCACCATAACCACCTA
AACGATCATCTCTGTCTCCTCTATCAAAGCCACCACGTGGAGAACGAGCT
CTACCGCCGCCGTAAGGTGATCGATCACGCATTCCTCCTTTTGGTGGCGA
ACGATACCTTGGATTACCTCCGCCAGGCCGGCCGNCCGCCACCTCGACGC
CCACCACCATAACCACCTAAACGATCATCTCTGTCTCCTCTATCAAAGCC
ACCACGTGGAGAACGAGCTCTACCGCCACCGTAAGGCGATCGATCACGCA
TTCCTCCTTTTGGTGGCGAACGATACCTTGGATTACCTCCGCCAGGCCGG
CCACCACCGCCACCGCCTCCTTGGCGAGGACCAGACCCTTTGGCCCACTC
AACAGTCATCACAGATCCCATAAGGCGTTGGTCATTTTCTTTCATCATCG
CTGTTTCTGCATCACGTCGTTCATCATATTGAATGAATccgaaatttttc
tttaaatcacATCGAAGAATTTTTCCGTATCTTCCGAAGACATTCTCCAA
ATCACGAGTGCGGGTATTAGGGTTGAGATTTCCAATAAACAACTCCGTAC
TCATTCTTGGACTAGATAGAAGAGAGAAGTTTAGGGTTAAGGATATTGGG
TGTAGGAACTTATTGTGCAACGTTCGAAAGAGTGCTGTTAATGGTATTCG
gagaaaaatgctaaaataccaGGGTTATCTTTGATTTCGATGATTTGATA
AGAAGTAATTGGGTCGAGTTTTCTTTGGATAAAGGAATTGGATTCCTATT
CCAGTNCCAATAAACAACTCCGTACTCATTCTTGGACTAGATAGAAGAGA
GAAGTTTAGGGTTAAGGATATTGGGTGTAGGAACTTATTGTGCAACGTCC
GAAAGAGTGCTGTTAATGGTATTCGgagaaaaatgctaaaataccaGGGT
ACTCTTTGATTTCGATGATTTGATAAGAAGTAATTGGGTCGAGTTTTCAT
TGGATAAAGGAATTGGATCCCTATTCCAGCAGTGGCTCGTCTGAGATAGT
GCCATGTTTATTACACTGACAGACGATATCATACGCAATGGTATTATGGT
AGGTAGTATACAACAAATTAAAGTCTGTGATAGTAAAAATGTATGGATGG
GTCAAATAAGGGTATAGTCTGAAATCCATCATGATGGTCGTTGGTGCTGT
TCGATCGACTGGTTGATCTTTCTTGGTGTTTTCTTTAGTCGGTGTTGTCT
GTCGAAGATTTGTGTATTTACAGGACAAAATGAGAAATTACACATACAGT
AGAAGTATTATCAGGTATTAGTGGAAATGAGTCCAATGACCTAACCTTTA
AACATTCAATCATCCATAAAATTTTAATCTTTTGGAAAATATCAAATGTT
TTGAGTACTCTTAGGTTCNACAGACGATATCATACGCAATGGTATTATGG
TAGGTAGTATACAACAAATTAAAGTCTGTGATAGTAAAAATGTATGGATG
GGTCAAATAAGTGTATAGTCTGAAATCCATCATGATGGTCGTTGGTGCTG
TTCGATCGACTGGTTGATCTTTCTTGGTGTTTTCTTTAGTCGGCGTTGTC
TGTCGAAGATTTGTGTATTTACAGGACAAAATGAGAAATTACACATACAG
TAGAAGTATTATCAGGTATTAGTGGAAATGAGTCTAATGACCTAACCTTT
AAACATTCAATCATCCATAAAATTTTAATCTTTTGGAAAATATCAAATGT
TTTGAGTACATGacaaaaatgcttcaaaaatagGAAATGCCCTCTTCAGA
CTTTCGAATGTAACTTCACCTATTAGAATACTTACCCTTAGTCCTGTAAA
TACACAAATTAGAGATCTTTAGCTGATTCCTTGTTATTGTAAGGCGGCTA
CTGCTGTGTGATAACACGTGTTTGNN
Run BLAST on NCBI

transcript from alignment at scaffold_389:82182..86265-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063432 ID=TCONS_00063432|Name=TCONS_00063432|organism=Clytia hemisphaerica|type=transcript|length=4084bp|location=Sequence derived from alignment at scaffold_389:82182..86265- (Clytia hemisphaerica)
TCGCGAGCAGAAACTCTCAATTTTCTTGAATTTAACCCCTTTCGTGAAAG
TAATGCCTTTGAAAATCCTGAGCCATATCGCGAAAGTTTATGGTCGCGAA
AAATGCCTTACAAAATAGAAAATCCGTAAAGATATCTAACTTAAGTAAAA
TGGAAGCTTTATGGCATTGCTTAGGCTGTTATAGCCTCAAAAGGCAATAG
ACAAAAGTTTATAAGAAGGTTAAAATTGGGCAGTTAAAAATACAATTGTT
TTTAGTGTAAATACTTGATTGCATCAATACACGCTGAGAAACTGTCATAA
TTTGGAACAGTTTAGGACACCCTGGGATTTTGAGAACAAACCATAGGCAA
GGCCCTCAAATAACAAATCCCAAAAAAGTCTGGAAAAGGGTTAAGTCTGA
AAGAGAATCATTTACTTACCTAAAATAACAAAAGAATGTATAGAAAAATG
TATGACAAAAAAACGACCTTACAATAGAATGCTCTGTCTTGAAATGAAAG
ACTACGTTTACCAAGAGCTACAAGAGAAATTTGTAAACACTTTGAGTTCA
AATTCTTAATATACAATGTGCTCGAAACAAAGCAGAACGGATTTTGAAGA
ATATAATCAGCTCATTTTAGGATAGAAGCTATTTTATCTAAAGATCTAAA
CATCTCCAACAGGCTTTAAAAAAATTTTCAGATACACGGTAGCATACTTT
TTAAAAAGAAATTTACTTAAAACGAAGGTCTCGTGAAAACAAAAATTCAT
TTTATAAAATCATTTAGTAGGGGGAATTTTGTTCGATTTTTTGGAATCGC
TTGACTGTTTTGTTAGAAGCACTTGTTATACATTTTTGGAAAGCTAAGGG
GTAGGGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAGGGGTAGGGGAATCGAAATTACTATGTTTC
CAATTTTTTTTCGGACACTTTGGTGTGATTTTTGGACAAATATGACGGTC
TCAGGCAAAAATCATACGGTTAAAAATTAATGAAAATTTTAGCTCGAGAA
AACGGAGACCTGTTGTATATTTTTGGAAAGCTCGTAAAAAATTAAGATTA
GAGATATATTGCAAGTATAGGTGATTTCTGTACATAACTCGAGATATTAA
CTCTTGAAAACCGTGTTTTTCAGCCAGAAACAGCTATTTTGTCCAGTTTT
TGCGCTTTTTGAAGCTCAATATCTCGAGTTAGGTATTGAAATCACCTATA
CTTGCAATATATCTCTAATCCTAATTTTATAAGAGCTTTCCAAAAATATA
CAACAGGTCTCCGTTTTCTCGAGCTAAAATTTTCATTAATTTTTAACCCT
ATGATTTTTTCCTGAGACCGTCATATTTGTCTGAAAATCACACCAAAGTG
TCCGAAAAAAAATTGGAAACATAGTAATTTTGATTCCCCTACCCCTTAGC
TTTCCAAAAATGTATAACAAGTGCTTCTAACAAAACAGTCGAGCGATTTT
ACAAAATGCCCTCTACTACATTGCGGACTGTTGCGGACCTTATTTGATGT
TTTCCATTTCAAACGAGCTGAAGTTTGCGAAGAACACAAAACAAGAAAGG
ATTTTTGTTATTTATGTTAAGATCGCTCAATATTATTTACATTTTCCAAA
ATGGCAAAATTAAAAATGTCAATAAAAATCTAGACGTCTCTGTTAAGCTC
TTTCAATCAATTTAGTTCGTTAAGTTTGTTTCAAATAAATACAAACCCTC
TATTGTTCTATTGCTATAGAGATCTAAGTTATCCCATTCACATAAGGTAT
GAAGTGCGAAAATTCTTCACGGCAACACAGCTTTACGAGTTTTGTCATGA
AGCAAATATAGGATCCCTTCAATTCAACGGTGAAGCTCCAATAAATTTGT
CACTAGCTACTTTGTTTACTTAAAAGCGCCTTGGTCCGCCGCCAAAACTA
CGGCGATCGCTACCGAAACTGTCTCTACGCCCCATTCGATCTCCTCCTCC
ACGTTGTCGATCACGAGGCGGTCCTCGGCGATCTCCTCCTGGTGGTCCTC
GTGCGTCGCTGAATCGATCTCCACGATCTCTCTGTCGGTCACGTGGTGGA
CCACGGTCATCAAAATCACGCCCGCCGCCACCTCGACGCCCACCACCATA
ACCACCTAAACGATCATCTCTGTCTCCTCTATCAAAGCCACCACGTGGAG
AACGAGCTCTACCGCCGCCGTAAGGTGATCGATCACGCATTCCTCCTTTT
GGTGGCGAACGATACCTTGGATTACCTCCGCCAGGCCGGCCGNCCGCCAC
CTCGACGCCCACCACCATAACCACCTAAACGATCATCTCTGTCTCCTCTA
TCAAAGCCACCACGTGGAGAACGAGCTCTACCGCCACCGTAAGGCGATCG
ATCACGCATTCCTCCTTTTGGTGGCGAACGATACCTTGGATTACCTCCGC
CAGGCCGGCCACCACCGCCACCGCCTCCTTGGCGAGGACCAGACCCTTTG
GCCCACTCAACAGTCATCACAGATCCCATAAGGCGTTGGTCATTTTCTTT
CATCATCGCTGTTTCTGCATCACGTCGTTCATCATATTGAATGAATCCGA
AATTTTTCTTTAAATCACATCGAAGAATTTTTCCGTATCTTCCGAAGACA
TTCTCCAAATCACGAGTGCGGGTATTAGGGTTGAGATTTCCAATAAACAA
CTCCGTACTCATTCTTGGACTAGATAGAAGAGAGAAGTTTAGGGTTAAGG
ATATTGGGTGTAGGAACTTATTGTGCAACGTTCGAAAGAGTGCTGTTAAT
GGTATTCGGAGAAAAATGCTAAAATACCAGGGTTATCTTTGATTTCGATG
ATTTGATAAGAAGTAATTGGGTCGAGTTTTCTTTGGATAAAGGAATTGGA
TTCCTATTCCAGTNCCAATAAACAACTCCGTACTCATTCTTGGACTAGAT
AGAAGAGAGAAGTTTAGGGTTAAGGATATTGGGTGTAGGAACTTATTGTG
CAACGTCCGAAAGAGTGCTGTTAATGGTATTCGGAGAAAAATGCTAAAAT
ACCAGGGTACTCTTTGATTTCGATGATTTGATAAGAAGTAATTGGGTCGA
GTTTTCATTGGATAAAGGAATTGGATCCCTATTCCAGCAGTGGCTCGTCT
GAGATAGTGCCATGTTTATTACACTGACAGACGATATCATACGCAATGGT
ATTATGGTAGGTAGTATACAACAAATTAAAGTCTGTGATAGTAAAAATGT
ATGGATGGGTCAAATAAGGGTATAGTCTGAAATCCATCATGATGGTCGTT
GGTGCTGTTCGATCGACTGGTTGATCTTTCTTGGTGTTTTCTTTAGTCGG
TGTTGTCTGTCGAAGATTTGTGTATTTACAGGACAAAATGAGAAATTACA
CATACAGTAGAAGTATTATCAGGTATTAGTGGAAATGAGTCCAATGACCT
AACCTTTAAACATTCAATCATCCATAAAATTTTAATCTTTTGGAAAATAT
CAAATGTTTTGAGTACTCTTAGGTTCNACAGACGATATCATACGCAATGG
TATTATGGTAGGTAGTATACAACAAATTAAAGTCTGTGATAGTAAAAATG
TATGGATGGGTCAAATAAGTGTATAGTCTGAAATCCATCATGATGGTCGT
TGGTGCTGTTCGATCGACTGGTTGATCTTTCTTGGTGTTTTCTTTAGTCG
GCGTTGTCTGTCGAAGATTTGTGTATTTACAGGACAAAATGAGAAATTAC
ACATACAGTAGAAGTATTATCAGGTATTAGTGGAAATGAGTCTAATGACC
TAACCTTTAAACATTCAATCATCCATAAAATTTTAATCTTTTGGAAAATA
TCAAATGTTTTGAGTACATGACAAAAATGCTTCAAAAATAGGAAATGCCC
TCTTCAGACTTTCGAATGTAACTTCACCTATTAGAATACTTACCCTTAGT
CCTGTAAATACACAAATTAGAGATCTTTAGCTGATTCCTTGTTATTGTAA
GGCGGCTACTGCTGTGTGATAACACGTGTTTGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039755XLOC_039755Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063432-exon-scaffold_389-1575043694:85505..86265TCONS_00063432-exon-scaffold_389-1575043694:85505..86265Clytia hemisphaericaexon
TCONS_00063432-exon-scaffold_389-1575043694:82182..84696TCONS_00063432-exon-scaffold_389-1575043694:82182..84696Clytia hemisphaericaexon
TCONS_00063432-exon-scaffold_389-1510915933:85505..86265TCONS_00063432-exon-scaffold_389-1510915933:85505..86265Clytia hemisphaericaexon
TCONS_00063432-exon-scaffold_389-1510915933:82182..84696TCONS_00063432-exon-scaffold_389-1510915933:82182..84696Clytia hemisphaericaexon
TCONS_00063432-exon-scaffold_389-1491911889:85505..86265TCONS_00063432-exon-scaffold_389-1491911889:85505..86265Clytia hemisphaericaexon
TCONS_00063432-exon-scaffold_389-1491911889:82182..84696TCONS_00063432-exon-scaffold_389-1491911889:82182..84696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_389supercontigscaffold_389:82182..86265 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.119441	0.424328	1.91777	1.02731	0.80019	0.556256	0.461176	0.384077	0.32487	0.23547	0.875371	0.948025	0.155727	0.0917501	0	0.0712679	0.0814338	0.104102	0.286082	0.227127	0.234599	0.133053	0.499524	0.326963	0.0938835	0.177926	0.114312	0.142051
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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