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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063430 ID=TCONS_00063430|Name=TCONS_00063430|organism=Clytia hemisphaerica|type=transcript|length=2945bp
ggggtaggggaatcgaaattactatgtttccaattttttttcggacactt
tggtgtgatttttggacaaatatgacggtctcaggcaaaaatcatacggt
taaaaattaatgaaaattttagctcgagaaaacggagacctgttgtatat
ttttggaaagctcgtaaaaaattaagattagagatatattgcaagtatag
gtgatttctgtacataactcgagatattaactcttgaaaaccgtgttttt
cagccagaaacagctattttgtccagtttttgcgctttttgaagctcaat
atctcgagttaggtattgaaatcacctatacttgcaatatatctctaatc
ctaattttataagagctttccaaaaatatacaacaggtctccgttttctc
gagctaaaattttcattaatttttaaccctatgattttttcctgagaccg
tcatatttgtctgaaaatcacaccaaagtgtccgaaaaaaaattggaaac
atagtaattttgattcccctaccccttagctttccaaaaatgtataacaa
gtgcttctaacaaaacagtcgagcgattttacaaaatgccctctactaca
TTGCGGACTGTTGCGGACCTTATTTGATGTTTTCCATTTCAAACGAGCTG
AAGTTTGCGAAGAACACAAAACAAGAAAGGATTTTTGTTATTTATGTTAA
GATCGCTCAATATTATTTACATTTTCCAAAAtggcaaaattaaaaatgtc
aatAAAAATCTAGACGTCTCTGTTAAGCTCTTTCAATCAATTTAGTTCGT
TAAGTTTGTTTCAAATAAATACAAACCCTCTATTGTTCTATTGCTATAGA
GATCTAAGTTATCCCATTCACATAAGGTATGAAGTGCGAAAATTCTTCAC
GGCAACACAGCTTTACGAGTTTTGTCATGAAGCAAATATAGGATCCCTTC
AATTCAACGGTGAAGCTCCAATAAATTTGTCACTAGCTACTTTGTTTACT
TAAAAGCGCCTTGGTCCGCCGCCAAAACTACGGCGATCGCTACCGAAACT
GTCTCTACGCCCCATTCGATCTCCTCCTCCACGTTGTCGATCACGAGGCG
GTCCTCGGCGATCTCCTCCTGGTGGTCCTCGTGCGTCGCTGAATCGATCT
CCACGATCTCTCTGTCGGTCACGTGGTGGACCACGGTCATCAAAATCACG
CCCGCCGCCACCTCGACGCCCACCACCATAACCACCTAAACGATCATCTC
TGTCTCCTCTATCAAAGCCACCACGTGGAGAACGAGCTCTACCGCCGCCG
TAAGGTGATCGATCACGCATTCCTCCTTTTGGTGGCGAACGATACCTTGG
ATTACCTCCGCCAGGCCGGCCACCACCGCCACCGCCTCCTTGGCGAGGAC
CAGACCCTTTGGCCCACTCAACAGTCATCACAGATCCCATAAGGCGTTGG
TCATTTTCTTTCATCATCGCTGTTTCTGCATCACGTCGTTCATCATATTG
AATGAATccgaaatttttctttaaatcacATCGAAGAATTTTTCCGTATC
TTCCGAAGACATTCTCCAAATCACGAGTGCGGGTATTAGGGTTGAGATTT
CCAATAAACAACTCCGTACTCATTCTTGGACTAGATAGAAGAGAGAAGTT
TAGGGTTAAGGATATTGGGTGTAGGAACTTATTGTGCAACGTTCGAAAGA
GTGCTGTTAATGGTATTCGgagaaaaatgctaaaataccaGGGTTATCTT
TGATTTCGATGATTTGATAAGAAGTAATTGGGTCGAGTTTTCTTTGGATA
AAGGAATTGGATTCCTATTCCAGTNCCAATAAACAACTCCGTACTCATTC
TTGGACTAGATAGAAGAGAGAAGTTTAGGGTTAAGGATATTGGGTGTAGG
AACTTATTGTGCAACGTCCGAAAGAGTGCTGTTAATGGTATTCGgagaaa
aatgctaaaataccaGGGTACTCTTTGATTTCGATGATTTGATAAGAAGT
AATTGGGTCGAGTTTTCATTGGATAAAGGAATTGGATCCCTATTCCAGCA
GTGGCTCGTCTGAGATAGTGCCATGTTTATTACACTGACAGACGATATCA
TACGCAATGGTATTATGGTAGGTAGTATACAACAAATTAAAGTCTGTGAT
AGTAAAAATGTATGGATGGGTCAAATAAGGGTATAGTCTGAAATCCATCA
TGATGGTCGTTGGTGCTGTTCGATCGACTGGTTGATCTTTCTTGGTGTTT
TCTTTAGTCGGTGTTGTCTGTCGAAGATTTGTGTATTTACAGGACAAAAT
GAGAAATTACACATACAGTAGAAGTATTATCAGGTATTAGTGGAAATGAG
TCCAATGACCTAACCTTTAAACATTCAATCATCCATAAAATTTTAATCTT
TTGGAAAATATCAAATGTTTTGAGTACTCTTAGGTTCNACAGACGATATC
ATACGCAATGGTATTATGGTAGGTAGTATACAACAAATTAAAGTCTGTGA
TAGTAAAAATGTATGGATGGGTCAAATAAGTGTATAGTCTGAAATCCATC
ATGATGGTCGTTGGTGCTGTTCGATCGACTGGTTGATCTTTCTTGGTGTT
TTCTTTAGTCGGCGTTGTCTGTCGAAGATTTGTGTATTTACAGGACAAAA
TGAGAAATTACACATACAGTAGAAGTATTATCAGGTATTAGTGGAAATGA
GTCTAATGACCTAACCTTTAAACATTCAATCATCCATAAAATTTTAATCT
TTTGGAAAATATCAAATGTTTTGAGTACATGacaaaaatgcttcaaaaat
agGAAATGCCCTCTTCAGACTTTCGAATGTAACTTCACCTATTAGAATAC
TTACCCTTAGTCCTGTAAATACACAAATTAGAGATCTTTAGCTGATTCCT
TGTTATTGTAAGGCGGCTACTGCTGTGTGATAACACGTGTTTGNN Run BLAST on NCBI transcript from alignment at scaffold_389:82182..85295- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063430 ID=TCONS_00063430|Name=TCONS_00063430|organism=Clytia hemisphaerica|type=transcript|length=3114bp|location=Sequence derived from alignment at scaffold_389:82182..85295- (Clytia hemisphaerica)
GGGGTAGGGGAATCGAAATTACTATGTTTCCAATTTTTTTTCGGACACTT
TGGTGTGATTTTTGGACAAATATGACGGTCTCAGGCAAAAATCATACGGT
TAAAAATTAATGAAAATTTTAGCTCGAGAAAACGGAGACCTGTTGTATAT
TTTTGGAAAGCTCGTAAAAAATTAAGATTAGAGATATATTGCAAGTATAG
GTGATTTCTGTACATAACTCGAGATATTAACTCTTGAAAACCGTGTTTTT
CAGCCAGAAACAGCTATTTTGTCCAGTTTTTGCGCTTTTTGAAGCTCAAT
ATCTCGAGTTAGGTATTGAAATCACCTATACTTGCAATATATCTCTAATC
CTAATTTTATAAGAGCTTTCCAAAAATATACAACAGGTCTCCGTTTTCTC
GAGCTAAAATTTTCATTAATTTTTAACCCTATGATTTTTTCCTGAGACCG
TCATATTTGTCTGAAAATCACACCAAAGTGTCCGAAAAAAAATTGGAAAC
ATAGTAATTTTGATTCCCCTACCCCTTAGCTTTCCAAAAATGTATAACAA
GTGCTTCTAACAAAACAGTCGAGCGATTTTACAAAATGCCCTCTACTACA
TTGCGGACTGTTGCGGACCTTATTTGATGTTTTCCATTTCAAACGAGCTG
AAGTTTGCGAAGAACACAAAACAAGAAAGGATTTTTGTTATTTATGTTAA
GATCGCTCAATATTATTTACATTTTCCAAAATGGCAAAATTAAAAATGTC
AATAAAAATCTAGACGTCTCTGTTAAGCTCTTTCAATCAATTTAGTTCGT
TAAGTTTGTTTCAAATAAATACAAACCCTCTATTGTTCTATTGCTATAGA
GATCTAAGTTATCCCATTCACATAAGGTATGAAGTGCGAAAATTCTTCAC
GGCAACACAGCTTTACGAGTTTTGTCATGAAGCAAATATAGGATCCCTTC
AATTCAACGGTGAAGCTCCAATAAATTTGTCACTAGCTACTTTGTTTACT
TAAAAGCGCCTTGGTCCGCCGCCAAAACTACGGCGATCGCTACCGAAACT
GTCTCTACGCCCCATTCGATCTCCTCCTCCACGTTGTCGATCACGAGGCG
GTCCTCGGCGATCTCCTCCTGGTGGTCCTCGTGCGTCGCTGAATCGATCT
CCACGATCTCTCTGTCGGTCACGTGGTGGACCACGGTCATCAAAATCACG
CCCGCCGCCACCTCGACGCCCACCACCATAACCACCTAAACGATCATCTC
TGTCTCCTCTATCAAAGCCACCACGTGGAGAACGAGCTCTACCGCCGCCG
TAAGGTGATCGATCACGCATTCCTCCTTTTGGTGGCGAACGATACCTTGG
ATTACCTCCGCCAGGCCGGCCGNCCGCCACCTCGACGCCCACCACCATAA
CCACCTAAACGATCATCTCTGTCTCCTCTATCAAAGCCACCACGTGGAGA
ACGAGCTCTACCGCCACCGTAAGGCGATCGATCACGCATTCCTCCTTTTG
GTGGCGAACGATACCTTGGATTACCTCCGCCAGGCCGGCCACCACCGCCA
CCGCCTCCTTGGCGAGGACCAGACCCTTTGGCCCACTCAACAGTCATCAC
AGATCCCATAAGGCGTTGGTCATTTTCTTTCATCATCGCTGTTTCTGCAT
CACGTCGTTCATCATATTGAATGAATCCGAAATTTTTCTTTAAATCACAT
CGAAGAATTTTTCCGTATCTTCCGAAGACATTCTCCAAATCACGAGTGCG
GGTATTAGGGTTGAGATTTCCAATAAACAACTCCGTACTCATTCTTGGAC
TAGATAGAAGAGAGAAGTTTAGGGTTAAGGATATTGGGTGTAGGAACTTA
TTGTGCAACGTTCGAAAGAGTGCTGTTAATGGTATTCGGAGAAAAATGCT
AAAATACCAGGGTTATCTTTGATTTCGATGATTTGATAAGAAGTAATTGG
GTCGAGTTTTCTTTGGATAAAGGAATTGGATTCCTATTCCAGTNCCAATA
AACAACTCCGTACTCATTCTTGGACTAGATAGAAGAGAGAAGTTTAGGGT
TAAGGATATTGGGTGTAGGAACTTATTGTGCAACGTCCGAAAGAGTGCTG
TTAATGGTATTCGGAGAAAAATGCTAAAATACCAGGGTACTCTTTGATTT
CGATGATTTGATAAGAAGTAATTGGGTCGAGTTTTCATTGGATAAAGGAA
TTGGATCCCTATTCCAGCAGTGGCTCGTCTGAGATAGTGCCATGTTTATT
ACACTGACAGACGATATCATACGCAATGGTATTATGGTAGGTAGTATACA
ACAAATTAAAGTCTGTGATAGTAAAAATGTATGGATGGGTCAAATAAGGG
TATAGTCTGAAATCCATCATGATGGTCGTTGGTGCTGTTCGATCGACTGG
TTGATCTTTCTTGGTGTTTTCTTTAGTCGGTGTTGTCTGTCGAAGATTTG
TGTATTTACAGGACAAAATGAGAAATTACACATACAGTAGAAGTATTATC
AGGTATTAGTGGAAATGAGTCCAATGACCTAACCTTTAAACATTCAATCA
TCCATAAAATTTTAATCTTTTGGAAAATATCAAATGTTTTGAGTACTCTT
AGGTTCNACAGACGATATCATACGCAATGGTATTATGGTAGGTAGTATAC
AACAAATTAAAGTCTGTGATAGTAAAAATGTATGGATGGGTCAAATAAGT
GTATAGTCTGAAATCCATCATGATGGTCGTTGGTGCTGTTCGATCGACTG
GTTGATCTTTCTTGGTGTTTTCTTTAGTCGGCGTTGTCTGTCGAAGATTT
GTGTATTTACAGGACAAAATGAGAAATTACACATACAGTAGAAGTATTAT
CAGGTATTAGTGGAAATGAGTCTAATGACCTAACCTTTAAACATTCAATC
ATCCATAAAATTTTAATCTTTTGGAAAATATCAAATGTTTTGAGTACATG
ACAAAAATGCTTCAAAAATAGGAAATGCCCTCTTCAGACTTTCGAATGTA
ACTTCACCTATTAGAATACTTACCCTTAGTCCTGTAAATACACAAATTAG
AGATCTTTAGCTGATTCCTTGTTATTGTAAGGCGGCTACTGCTGTGTGAT
AACACGTGTTTGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063430-exon-scaffold_389-1575043694:83932..85295 | TCONS_00063430-exon-scaffold_389-1575043694:83932..85295 | Clytia hemisphaerica | exon |
| TCONS_00063430-exon-scaffold_389-1575043694:82182..83762 | TCONS_00063430-exon-scaffold_389-1575043694:82182..83762 | Clytia hemisphaerica | exon |
| TCONS_00063430-exon-scaffold_389-1510915933:83932..85295 | TCONS_00063430-exon-scaffold_389-1510915933:83932..85295 | Clytia hemisphaerica | exon |
| TCONS_00063430-exon-scaffold_389-1510915933:82182..83762 | TCONS_00063430-exon-scaffold_389-1510915933:82182..83762 | Clytia hemisphaerica | exon |
| TCONS_00063430-exon-scaffold_389-1491911889:83932..85295 | TCONS_00063430-exon-scaffold_389-1491911889:83932..85295 | Clytia hemisphaerica | exon |
| TCONS_00063430-exon-scaffold_389-1491911889:82182..83762 | TCONS_00063430-exon-scaffold_389-1491911889:82182..83762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_389 | supercontig | scaffold_389:82182..85295 - |
Blast
The following BLAST results are available for this feature:
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