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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063425 ID=TCONS_00063425|Name=TCONS_00063425|organism=Clytia hemisphaerica|type=transcript|length=1553bp
caagccgttactagcaaccctgcggggcccaaggcgccgagtatgcaccc
ggcacagtgacaagccgttactagcaaccctgaccctacctaactgttac
ctaatcaattccaaacaacaaaacccccggcaaatttaaaatgtcggaat
gagcaatagacaaccttcttttgagaccttgtagtTATACTTTCCCTGGA
AGGAGGCTTTGTCAAGCTTTTTCAAGTTAAGTGAATCAATCTACttttaa
aacttcaaaaagcttttgagaaatttgattGGCTTGTTTTCAAGGTTTCT
CTTGGATAGAAGCAGGGGTTGAGTGACTTCTTATATCTAATATAGCCCTT
CAAACAGTCTTATTTCTTCCCAAAGATTTTCTAGAATTTCTAAAGGAAAA
TCACATCGAACAGGATCCTCAATAATCTGGCTTATGGTTATTAATACTAG
ATTAGAAGATCATAGCTATATTTTGTATTCCttcaatatattttctttct
tgtGTTTATTCAGGACTTTGATCTGGGGGATGGATGATTCAACGACCAAC
AACCGACGACTGCTGAGAAAGCTGAGCTCGACCAGAAAAGTTTATACACG
AAATGAAAGATTTGACCCTGGATTTTAAGGACGACTTGTGTGATCCTGCA
GCAACATGTAAATTTATGGCTGGATAGCTGGACTCCTTGACTAGTACTGC
TCAGCTGCTTGCTGATTTCTCCATATCCAAGTGTAGAAgatgaaaatata
tcttttgtcatgCTGGAATCGAGGCAGAGGCAGAAAaagcaagaaagaaa
tttttctacTTAATTCTTGTTAACTTAAAATTATCCATATTTTCTAAATA
AATCAAGAAGAAATCATTTATTACATTAACACATACAGTTGTCTGTCAAA
TTAATTTCATGAGGGACTGATTTGGAACCAGTTGGAACACATTATTTAGT
GAAATACTCCTCTAAAAAGTCATTAAATTCCCGGAAATTTAGAAAGTCCT
GAATTTGAACTTCTAAGTCAAAAACTGAGCTTTATTCAAAGTTTCCTGAT
GTTATATGGGTTGTATTGATCATTCCCAAGCATGTCCTCTACCCTTCCAA
TAGACTTGTAAAAGCAAATAATGGCCTAAAGTCCTATTTATAAGCCTATA
TTTCCGTTGTAAACAGgtccgaaaattttgaaaaattacctttGGCGTCT
TTGATCCCGAtttctaaaaagagaaaaagagaaacTGTTTATGAAGTNTG
GCGTCTTTGATCCCGAtttctaaaaagagaaaaagagaaagtgtttataa
aattttatttttcttaaagctCAATCCTTCCCTGAAAAAAGTCTTTTtac
agaattaaaaaaacttcTTTAGTTGTTGAGATATTTGGGATTTTGTATAG
GAGGGTACCATTGCGCGCTCGAGCTCGGGGATAATGTATGGGGCCATTTT
TCTCGCGCGCAATGGTACCCCAGACATATGTccggggataaaaatatttg
ttttgttcCCCGGACATTTTCCCCGTATTGTccggggaatcggcagggtc
gtc Run BLAST on NCBI transcript from alignment at scaffold_389:96556..98252+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063425 ID=TCONS_00063425|Name=TCONS_00063425|organism=Clytia hemisphaerica|type=transcript|length=1697bp|location=Sequence derived from alignment at scaffold_389:96556..98252+ (Clytia hemisphaerica)
caagccgttactagcaaccctgcggggcccaaggcgccgagtatgcaccc
ggcacagtgacaagccgttactagcaaccctgaccctacctaactgttac
ctaatcaattccaaacaacaaaacccccggcaaatttaaaatgtcggaat
gagcaatagacaaccttcttttgagaccttgtagtTATACTTTCCCTGGA
AGGAGGCTTTGTCAAGCTTTTTCAAGTTAAGTGAATCAATCTACttttaa
aacttcaaaaagcttttgagaaatttgattGGCTTGTTTTCAAGGTTTCT
CTTGGATAGAAGCAGGGGTTGAGTGACTTCTTATATCTAATATAGCCCTT
CAAACAGTCTTATTTCTTCCCAAAGATTTTCTAGAATTTCTAAAGGAAAA
TCACATCGAACAGGATCCTCAATAATCTGGCTTATGGTTATTAATACTAG
ATTAGAAGATCATAGCTATATTTTGTATTCCttcaatatattttctttct
tgtGTTTATTCAGGACTTTGATCTGGGGGATGGATGATTCAACGACCAAC
AACCGACGACTGCTGAGAAAGCTGAGCTCGACCAGAAAAGTTTATACACG
AAATGAAAGATTTGACCCTGGATTTTAAGGTAGGActtatttgaaatatt
cttaagagGATTAAGGTACTAATAGTTCTTTTCAAGGCAGAGGGGAGTAA
TGATTGGGTACGAACTGATGAAAATagacattttttgttgttgtttttta
tttattctttcttAATTTTGTAGGACGACTTGTGTGATCCTGCAGCAACA
TGTAAATTTATGGCTGGATAGCTGGACTCCTTGACTAGTACTGCTCAGCT
GCTTGCTGATTTCTCCATATCCAAGTGTAGAAgatgaaaatatatctttt
gtcatgCTGGAATCGAGGCAGAGGCAGAAAaagcaagaaagaaatttttc
tacTTAATTCTTGTTAACTTAAAATTATCCATATTTTCTAAATAAATCAA
GAAGAAATCATTTATTACATTAACACATACAGTTGTCTGTCAAATTAATT
TCATGAGGGACTGATTTGGAACCAGTTGGAACACATTATTTAGTGAAATA
CTCCTCTAAAAAGTCATTAAATTCCCGGAAATTTAGAAAGTCCTGAATTT
GAACTTCTAAGTCAAAAACTGAGCTTTATTCAAAGTTTCCTGATGTTATA
TGGGTTGTATTGATCATTCCCAAGCATGTCCTCTACCCTTCCAATAGACT
TGTAAAAGCAAATAATGGCCTAAAGTCCTATTTATAAGCCTATATTTCCG
TTGTAAACAGgtccgaaaattttgaaaaattacctttGGCGTCTTTGATC
CCGAtttctaaaaagagaaaaagagaaacTGTTTATGAAGTNTGGCGTCT
TTGATCCCGAtttctaaaaagagaaaaagagaaagtgtttataaaatttt
atttttcttaaagctCAATCCTTCCCTGAAAAAAGTCTTTTtacagaatt
aaaaaaacttcTTTAGTTGTTGAGATATTTGGGATTTTGTATAGGAGGGT
ACCATTGCGCGCTCGAGCTCGGGGATAATGTATGGGGCCATTTTTCTCGC
GCGCAATGGTACCCCAGACATATGTccggggataaaaatatttgttttgt
tcCCCGGACATTTTCCCCGTATTGTccggggaatcggcagggtcgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063425-exon-scaffold_389-1491911889:96556..97184 | TCONS_00063425-exon-scaffold_389-1491911889:96556..97184 | Clytia hemisphaerica | exon |
| TCONS_00063425-exon-scaffold_389-1510915933:96556..97184 | TCONS_00063425-exon-scaffold_389-1510915933:96556..97184 | Clytia hemisphaerica | exon |
| TCONS_00063425-exon-scaffold_389-1575043694:96556..97184 | TCONS_00063425-exon-scaffold_389-1575043694:96556..97184 | Clytia hemisphaerica | exon |
| TCONS_00063425-exon-scaffold_389-1491911889:97329..98252 | TCONS_00063425-exon-scaffold_389-1491911889:97329..98252 | Clytia hemisphaerica | exon |
| TCONS_00063425-exon-scaffold_389-1510915933:97329..98252 | TCONS_00063425-exon-scaffold_389-1510915933:97329..98252 | Clytia hemisphaerica | exon |
| TCONS_00063425-exon-scaffold_389-1575043694:97329..98252 | TCONS_00063425-exon-scaffold_389-1575043694:97329..98252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_389 | supercontig | scaffold_389:96556..98252 + |
Blast
The following BLAST results are available for this feature:
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