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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063422 ID=TCONS_00063422|Name=TCONS_00063422|organism=Clytia hemisphaerica|type=transcript|length=1890bp
NNCAAACACGTGTTATCACACAGCAGTAGCCGCCTTACAATAACAAGGAA
TCAGCTAAAGATCTCTAATTTGTGTATTTACAGGACTAAGGTCCAAGAAT
GAGTACGGAGTTGTTTATTGGAAATCTCAACCCTAATACCCGCACTCGTG
ATTTGGAGAATGTCTTCGGAAGATACGGAAAAATTCTTCGATgtgattta
aagaaaaatttcggATTCATTCAATATGATGAACGACGTGATGCAGAAAC
AGCGATGATGAAAGAAAATGACCAACGCCTTATGGGATCTGTGATGACTG
TTGAGTGGGCCAAAGGGTCTGGTCCTCGCCAAGGAGGCGGTGGCGGTGGT
GGCCGGCCTGGCGGAGGTAATCCAAGGTATCGTTCGCCACCAAAAGGAGG
AATGCGTGATCGATCGCCTTACGGTGGCGGTAGAGCTCGTTCTCCACGTG
GTGGCTTTGATAGAGGAGACAGAGATGATCGTTTAGGTGGTTATGGTGGT
GGGCGTCGAGGTGGCGGNCGGCCGGCCTGGCGGAGGTAATCCAAGGTATC
GTTCGCCACCAAAAGGAGGAATGCGTGATCGATCACCTTACGGCGGCGGT
AGAGCTCGTTCTCCACGTGGTGGCTTTGATAGAGGAGACAGAGATGATCG
TTTAGGTGGTTATGGTGGTGGGCGTCGAGGTGGCGGCGGGCGTGATTTTG
ATGACCGTGGTCCACCACGTGACCGACAGAGAGATCGTGGAGATCGATTC
AGCGACGCACGAGGACCACCAGGAGGAGATCGCCGAGGACCGCCTCGTGA
TCGACAACGTGGAGGAGGAGATCGAATGGGGCGTAGAGACAGTTTCGGTA
GCGATCGCCGTAGTTTTGGCGGCGGACCAAGGCGCTTTTAAGTAAACAAA
GTAGCTAGTGACAAATTTATTGGAGCTTCACCGTTGAATTGAAGGGATCC
TATATTTGCTTCATGACAAAACTCGTAAAGCTGTGTTGCCGTGAAGAATT
TTCGCACTTCATACCTTATGTGAATGGGATAACTTAGATCTCTATAGCAA
TAGAACAATAGAGGGTTTGTATTTATTTGAAACAAACTTAACGAACTAAA
TTGATTGAAAGAGCTTAACAGAGACGTCTAGATTTTTattgacattttta
attttgccaTTTTGGAAAATGTAAATAATATTGAGCGATCTTAACATAAA
TAACAAAAATCCTTTCTTGTTTTGTGTTCTTCGCAAACTTCAGCTCGTTT
GAAATGGAAAACATCAAATAAGGTCCGCAACAGTCCGCAAtgtagtagag
ggcattttgtaaaatcgctcgactgttttgttagaagcacttgttataca
tttttggaaagctaaggggtaggggaatcaaaattactatgtttccaatt
ttttttcggacactttggtgtgattttcagacaaatatgacggtctcagg
aaaaaatcatagggttaaaaattaatgaaaattttagctcgagaaaacgg
agacctgttgtatatttttggaaagctcttataaaattaggattagagat
atattgcaagtataggtgatttcaatacctaactcgagatattgagcttc
aaaaagcgcaaaaactggacaaaatagctgtttctggctgaaaaacacgg
ttttcaagagttaatatctcgagttatgtacagaaatcacctatacttgc
aatatatctctaatcttaattttttacgagctttccaaaaatatacaaca
ggtctccgttttctcgagctaaaattttcattaatttttaaccgtatgat
ttttgcctgagaccgtcatatttgtccaaaaatcacaccaaagtgtccga
aaaaaaattggaaacatagtaatttcgattcccctacccc Run BLAST on NCBI transcript from alignment at scaffold_389:82182..85295+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063422 ID=TCONS_00063422|Name=TCONS_00063422|organism=Clytia hemisphaerica|type=transcript|length=3114bp|location=Sequence derived from alignment at scaffold_389:82182..85295+ (Clytia hemisphaerica)
NNCAAACACGTGTTATCACACAGCAGTAGCCGCCTTACAATAACAAGGAA
TCAGCTAAAGATCTCTAATTTGTGTATTTACAGGACTAAGGGTAAGTATT
CTAATAGGTGAAGTTACATTCGAAAGTCTGAAGAGGGCATTTCctatttt
tgaagcatttttgtCATGTACTCAAAACATTTGATATTTTCCAAAAGATT
AAAATTTTATGGATGATTGAATGTTTAAAGGTTAGGTCATTAGACTCATT
TCCACTAATACCTGATAATACTTCTACTGTATGTGTAATTTCTCATTTTG
TCCTGTAAATACACAAATCTTCGACAGACAACGCCGACTAAAGAAAACAC
CAAGAAAGATCAACCAGTCGATCGAACAGCACCAACGACCATCATGATGG
ATTTCAGACTATACACTTATTTGACCCATCCATACATTTTTACTATCACA
GACTTTAATTTGTTGTATACTACCTACCATAATACCATTGCGTATGATAT
CGTCTGTNGAACCTAAGAGTACTCAAAACATTTGATATTTTCCAAAAGAT
TAAAATTTTATGGATGATTGAATGTTTAAAGGTTAGGTCATTGGACTCAT
TTCCACTAATACCTGATAATACTTCTACTGTATGTGTAATTTCTCATTTT
GTCCTGTAAATACACAAATCTTCGACAGACAACACCGACTAAAGAAAACA
CCAAGAAAGATCAACCAGTCGATCGAACAGCACCAACGACCATCATGATG
GATTTCAGACTATACCCTTATTTGACCCATCCATACATTTTTACTATCAC
AGACTTTAATTTGTTGTATACTACCTACCATAATACCATTGCGTATGATA
TCGTCTGTCAGTGTAATAAACATGGCACTATCTCAGACGAGCCACTGCTG
GAATAGGGATCCAATTCCTTTATCCAATGAAAACTCGACCCAATTACTTC
TTATCAAATCATCGAAATCAAAGAGTACCCtggtattttagcatttttct
cCGAATACCATTAACAGCACTCTTTCGGACGTTGCACAATAAGTTCCTAC
ACCCAATATCCTTAACCCTAAACTTCTCTCTTCTATCTAGTCCAAGAATG
AGTACGGAGTTGTTTATTGGNACTGGAATAGGAATCCAATTCCTTTATCC
AAAGAAAACTCGACCCAATTACTTCTTATCAAATCATCGAAATCAAAGAT
AACCCtggtattttagcatttttctcCGAATACCATTAACAGCACTCTTT
CGAACGTTGCACAATAAGTTCCTACACCCAATATCCTTAACCCTAAACTT
CTCTCTTCTATCTAGTCCAAGAATGAGTACGGAGTTGTTTATTGGAAATC
TCAACCCTAATACCCGCACTCGTGATTTGGAGAATGTCTTCGGAAGATAC
GGAAAAATTCTTCGATgtgatttaaagaaaaatttcggATTCATTCAATA
TGATGAACGACGTGATGCAGAAACAGCGATGATGAAAGAAAATGACCAAC
GCCTTATGGGATCTGTGATGACTGTTGAGTGGGCCAAAGGGTCTGGTCCT
CGCCAAGGAGGCGGTGGCGGTGGTGGCCGGCCTGGCGGAGGTAATCCAAG
GTATCGTTCGCCACCAAAAGGAGGAATGCGTGATCGATCGCCTTACGGTG
GCGGTAGAGCTCGTTCTCCACGTGGTGGCTTTGATAGAGGAGACAGAGAT
GATCGTTTAGGTGGTTATGGTGGTGGGCGTCGAGGTGGCGGNCGGCCGGC
CTGGCGGAGGTAATCCAAGGTATCGTTCGCCACCAAAAGGAGGAATGCGT
GATCGATCACCTTACGGCGGCGGTAGAGCTCGTTCTCCACGTGGTGGCTT
TGATAGAGGAGACAGAGATGATCGTTTAGGTGGTTATGGTGGTGGGCGTC
GAGGTGGCGGCGGGCGTGATTTTGATGACCGTGGTCCACCACGTGACCGA
CAGAGAGATCGTGGAGATCGATTCAGCGACGCACGAGGACCACCAGGAGG
AGATCGCCGAGGACCGCCTCGTGATCGACAACGTGGAGGAGGAGATCGAA
TGGGGCGTAGAGACAGTTTCGGTAGCGATCGCCGTAGTTTTGGCGGCGGA
CCAAGGCGCTTTTAAGTAAACAAAGTAGCTAGTGACAAATTTATTGGAGC
TTCACCGTTGAATTGAAGGGATCCTATATTTGCTTCATGACAAAACTCGT
AAAGCTGTGTTGCCGTGAAGAATTTTCGCACTTCATACCTTATGTGAATG
GGATAACTTAGATCTCTATAGCAATAGAACAATAGAGGGTTTGTATTTAT
TTGAAACAAACTTAACGAACTAAATTGATTGAAAGAGCTTAACAGAGACG
TCTAGATTTTTattgacatttttaattttgccaTTTTGGAAAATGTAAAT
AATATTGAGCGATCTTAACATAAATAACAAAAATCCTTTCTTGTTTTGTG
TTCTTCGCAAACTTCAGCTCGTTTGAAATGGAAAACATCAAATAAGGTCC
GCAACAGTCCGCAAtgtagtagagggcattttgtaaaatcgctcgactgt
tttgttagaagcacttgttatacatttttggaaagctaaggggtagggga
atcaaaattactatgtttccaattttttttcggacactttggtgtgattt
tcagacaaatatgacggtctcaggaaaaaatcatagggttaaaaattaat
gaaaattttagctcgagaaaacggagacctgttgtatatttttggaaagc
tcttataaaattaggattagagatatattgcaagtataggtgatttcaat
acctaactcgagatattgagcttcaaaaagcgcaaaaactggacaaaata
gctgtttctggctgaaaaacacggttttcaagagttaatatctcgagtta
tgtacagaaatcacctatacttgcaatatatctctaatcttaatttttta
cgagctttccaaaaatatacaacaggtctccgttttctcgagctaaaatt
ttcattaatttttaaccgtatgatttttgcctgagaccgtcatatttgtc
caaaaatcacaccaaagtgtccgaaaaaaaattggaaacatagtaatttc
gattcccctacccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063422-exon-scaffold_389-1491911889:82182..82272 | TCONS_00063422-exon-scaffold_389-1491911889:82182..82272 | Clytia hemisphaerica | exon |
| TCONS_00063422-exon-scaffold_389-1510915933:82182..82272 | TCONS_00063422-exon-scaffold_389-1510915933:82182..82272 | Clytia hemisphaerica | exon |
| TCONS_00063422-exon-scaffold_389-1575043694:82182..82272 | TCONS_00063422-exon-scaffold_389-1575043694:82182..82272 | Clytia hemisphaerica | exon |
| TCONS_00063422-exon-scaffold_389-1491911889:83497..85295 | TCONS_00063422-exon-scaffold_389-1491911889:83497..85295 | Clytia hemisphaerica | exon |
| TCONS_00063422-exon-scaffold_389-1510915933:83497..85295 | TCONS_00063422-exon-scaffold_389-1510915933:83497..85295 | Clytia hemisphaerica | exon |
| TCONS_00063422-exon-scaffold_389-1575043694:83497..85295 | TCONS_00063422-exon-scaffold_389-1575043694:83497..85295 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_389 | supercontig | scaffold_389:82182..85295 + |
Blast
The following BLAST results are available for this feature:
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