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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063420 ID=TCONS_00063420|Name=TCONS_00063420|organism=Clytia hemisphaerica|type=transcript|length=3040bp
AGTCAgggaaaatctttaaaaatttggtaTTACGATTAATTAGATTAGAA
GGAACACGTACCTGAACAAACGTGTACGACTTAGATAAGCGCCTTTTTCT
TACTCTTTATCTTTAAATTGAAGCGGGCAGCGGACTAACAgtctttttaa
gatattttaagTTATAAAACAAACCGCAAGAAACCCAGCATGGAGAAGGG
GTATTTTTTAATGCAGAATATGATGATCGatatctttttaaaattctatg
ttgggatttttgcgaatttccCCGTTACTATGGCCGCGCGCCCCGTTAAG
ACTTCCGTTCGAAATCGAAAACGAAACTAAATTCCAAAGTCCAAAATTGC
TGTGCGCGTAatatcaaaaaatcgaaattagtCTCTGACTGAAATGGCAG
GCTAGATCTGtgctattttgccttattttgaacTAGGTTTGAGGGTTACT
TAAGCTAAACACCAAAAACTTTGACTTTCACAAGAAGTTAGAGTGGGCGA
AACATTTCATTTTGAGCAGTAGaccctttttcaatttttattcccTTGAt
gtaaatgaatttattttttatttttatttttattttttttttaattaaag
aaaTGTGTCAACTTTGGAGGTATTGGTATCTTACACGTAAGAACTAAGAA
CTGTTGGGTTGTTTTTTCCAGACATTTTCCATGACACAGCATAGAGCTTG
TTTGATTTTTGCAgcattttttcatcatttttaaatttttaaaaactttt
catatATAGTGGTATGTGGTGGTATACATAGTCATAtatagaaaacagaa
aaatgaagcgactgcttGTTATTAGTCATATAGTgtgtatattatattat
attatttttaagCAAACAAGATTTTTTTACTAGGCATATTCATCAGGTAT
TCATTTTTGATgaattaaaaacatttcaaaaaagagGTTTTATACTGAGA
GATTCATCCCAAATagggcgagaccaatttaatttgttgttctacgggca
aaTTGCTAGCAAAATATGGGGCGGTccttaaaataagaataaatttttca
tttatcaggtgTAGTGTGTAAGTAGTGTaaagtggaaattcaatattatt
ttttttttggttttagtATAAATAGGATCTGTTGGgcctgtagaacaaca
aattaaattggtcttgcCTAGTTTAAACTTTTTGTGGATAGATCAAGTTT
TTAAAAACCAATATTATGCCTTGCATTTatttatgaatatttttattttc
ttccagcgtaataatataaaataagaaaGTAAAACTATGGACTGTGAATC
ACTTATTAGTGAACTACTCCAGATCCTGCCGAAGGGAAAAGGcaagaaag
aaaaacacaaagtgcgaagaaaaaaaggaagactAGCCGCTTCATTGgag
aaAGAAATACCAGAATTGTTGAAGAAAGAGTCAATTGGTTCAATACGCGC
TAAACTTTGGAGTCAGATTTATCGAAAGTTTCGAAAGGGTGATCCTTGTA
ATGGAGAGACTAGTCACGATGAAGGAGATAGTGATGTTGAGCGACCTTTG
GTATGTACTGAAAACAATTATGCATCTCAAACTCATTATCTCAATTATTA
GGGGGTTGGGTATACAGGGTGGGTTTCAAAATTGTTcgtcgaaaaaattt
ttttttctattcgctctttgaaaaaagatctCACAGGCTAATTAGGATAC
TTAAGATACCATTCCTGCCAAAAATATATCTTGGGgctcataaattttga
aaatcgactaaccACCCAATTAAACACCCACTGATAATAGCTTTTTTGCC
CTTTTTGGCCAGCAGCCAAATTTAGTCGAAATCAATACATTTAAGGCATC
AACTTGTAATATTGGGCCATTTCACTTTGTATCCATACAGGTGGGGGTAG
ACAAATAGTTCTAGAGGGTAATCTCCAGGGTTTGTATATTTTCATATACG
TCCCTGTGTGGTTTTTAAAAGGAACAGCCAATTTTGATCAATGTTAATGT
ACTTTTCTTATCTAATCAGGTTAACGAAGATACTCCTGAATCGGACGAAG
AAACTACCGAATGTGATAGCTTTGAGATGGAGATTTGCAACAGAATGGCT
GATATTATTCGTTTGGAGCAACGACATGCTAAGTTTCATAAACATTTGAG
TAGACCATCAAAAATTGGAGCAGCTGCAATATGTAGTGGTATTACTGGAT
TAGTAAACGAACAACTTTTTAGAGACATACAACTTCACATTATATCACCA
AATAATCTGCGTGGCATATTCTTTCGTGAAAATAGGGACATTTTCACCAT
CAAAGCTGGAATGTTTGGTATTAAGCCAATCATTGTGAAAGGAATTTCTG
ACTCTTCAATTATTGAGCAGAAAAATCATTCTATAGTGTTGGCTCACGAA
TTTAGAATTCTCCAATTTCTTGGTCCCCATCGTCACCTTATCGATTATTA
TGGCTTAGTCGAACTCAATGGGATTCCTCAGATAGTCTTGGATGATGATT
TTAAATTTGCTGGTTTTGAGAGGTTCTACCAAGAAAACCGTCGCTTTGAT
ATCTACACCATTCAGGCATTGTTTAGAGACATAACATCTGTTGTTGAATT
CCTCCATGTGAAGGGTGTTATTCACATGAATATAAcagaagattcttttg
tgttcagTCTCGATGTTTCTGGTCCAGAGTGGAGGTATTTCCCCATCCTT
TGTGATTTCTCCTGTTGTTGTCTGGTCTCTGATGTGAAAGTACTGACGCC
ACAATTGCAGAGCAGATTTCGATCAACAAAACATCTTCCCGTAGAAGTGA
TGCGTGGAGAAAAATTGCCATCTTTCAATTGTGACATTTATGCTGTAGCT
GTTTTGATGTCACATTTTTCAAACCGTTTGAACACTCCTCAAGAAcaaca
tatttttgatgaaGTTACTATCAAGCTTTTAAGAAATACTACAGATATTT
TTATTGATTCATTGTatgatttcattaaaaactaaagtatttgaaacttt
ttcttcTTTGCTTGTTTGACTTTCCCTAATTCCCATATAG Run BLAST on NCBI transcript from alignment at scaffold_389:64235..67692+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063420 ID=TCONS_00063420|Name=TCONS_00063420|organism=Clytia hemisphaerica|type=transcript|length=3458bp|location=Sequence derived from alignment at scaffold_389:64235..67692+ (Clytia hemisphaerica)
AGTCAgggaaaatctttaaaaatttggtaTTACGATTAATTAGATTAGAA
GGAACACGTACCTGAACAAACGTGTACGACTTAGATAAGCGCCTTTTTCT
TACTCTTTATCTTTAAATTGAAGCGGGCAGCGGACTAACAgtctttttaa
gatattttaagTTATAAAACAAACCGCAAGAAACCCAGCATGGAGAAGGG
GTATTTTTTAATGCAGAATATGATGATCGatatctttttaaaattctatg
ttgggatttttgcgaatttccCCGTTACTATGGCCGCGCGCCCCGTTAAG
ACTTCCGTTCGAAATCGAAAACGAAACTAAATTCCAAAGTCCAAAATTGC
TGTGCGCGTAatatcaaaaaatcgaaattagtCTCTGACTGAAATGGCAG
GCTAGATCTGtgctattttgccttattttgaacTAGGTTTGAGGGTTACT
TAAGCTAAACACCAAAAACTTTGACTTTCACAAGAAGTTAGAGTGGGCGA
AACATTTCATTTTGAGCAGTAGaccctttttcaatttttattcccTTGAt
gtaaatgaatttattttttatttttatttttattttttttttaattaaag
aaaTGTGTCAACTTTGGAGGTATTGGTATCTTACACGTAAGAACTAAGAA
CTGTTGGGTTGTTTTTTCCAGACATTTTCCATGACACAGCATAGAGCTTG
TTTGATTTTTGCAgcattttttcatcatttttaaatttttaaaaactttt
catatATAGTGGTATGTGGTGGTATACATAGTCATAtatagaaaacagaa
aaatgaagcgactgcttGTTATTAGTCATATAGTgtgtatattatattat
attatttttaagCAAACAAGATTTTTTTACTAGGCATATTCATCAGGTAT
TCATTTTTGATgaattaaaaacatttcaaaaaagagGTTTTATACTGAGA
GATTCATCCCAAATagggcgagaccaatttaatttgttgttctacgggca
aaTTGCTAGCAAAATATGGGGCGGTccttaaaataagaataaatttttca
tttatcaggtgTAGTGTGTAAGTAGTGTaaagtggaaattcaatattatt
ttttttttggttttagtATAAATAGGATCTGTTGGgcctgtagaacaaca
aattaaattggtcttgcCTAGTTTAAACTTTTTGTGGATAGATCAAGTTT
TTAAAAACCAATATTATGCCTTGCATTTatttatgaatatttttattttc
ttccagcgtaataatataaaataagaaaGTAAAACTATGGACTGTGAATC
ACTTATTAGTGAACTACTCCAGATCCTGCCGAAGGGAAAAGGcaagaaag
aaaaacacaaagtgcgaagaaaaaaaggaagactAGCCGCTTCATTGgag
gtaaatattttttttacatttttttacatttttttaaacaacattacctt
aagggaataaattaatgtGAGAATTAATTAATGCGGAATTAATTAATGCA
AATTTGACCTTtcttcgcaaaattaaatttctgcCATTCGCATTAATAAA
TTCcgcatttttttctaaattcctCAATTCCGCAAAAAATCACTTAAAAT
GGGCCTattcgcattaatttattccgcaaaacataaaatttttttgggtt
GCACGCATTAATTAATTCTCACAATAATTTATTCCCTTACTTATAAGCAA
AATTATTTAATGCATATAAATGAAACTTCAGTTGACCTATGGTTCGGCCA
TTCCTTTCTCATCTTCAGGgatattttccccattttctcaTGGACGTAta
acttttttctaattttagaaAGAAATACCAGAATTGTTGAAGAAAGAGTC
AATTGGTTCAATACGCGCTAAACTTTGGAGTCAGATTTATCGAAAGTTTC
GAAAGGGTGATCCTTGTAATGGAGAGACTAGTCACGATGAAGGAGATAGT
GATGTTGAGCGACCTTTGGTATGTACTGAAAACAATTATGCATCTCAAAC
TCATTATCTCAATTATTAGGGGGTTGGGTATACAGGGTGGGTTTCAAAAT
TGTTcgtcgaaaaaatttttttttctattcgctctttgaaaaaagatctC
ACAGGCTAATTAGGATACTTAAGATACCATTCCTGCCAAAAATATATCTT
GGGgctcataaattttgaaaatcgactaaccACCCAATTAAACACCCACT
GATAATAGCTTTTTTGCCCTTTTTGGCCAGCAGCCAAATTTAGTCGAAAT
CAATACATTTAAGGCATCAACTTGTAATATTGGGCCATTTCACTTTGTAT
CCATACAGGTGGGGGTAGACAAATAGTTCTAGAGGGTAATCTCCAGGGTT
TGTATATTTTCATATACGTCCCTGTGTGGTTTTTAAAAGGAACAGCCAAT
TTTGATCAATGTTAATGTACTTTTCTTATCTAATCAGGTTAACGAAGATA
CTCCTGAATCGGACGAAGAAACTACCGAATGTGATAGCTTTGAGATGGAG
ATTTGCAACAGAATGGCTGATATTATTCGTTTGGAGCAACGACATGCTAA
GTTTCATAAACATTTGAGTAGACCATCAAAAATTGGAGCAGCTGCAATAT
GTAGTGGTATTACTGGATTAGTAAACGAACAACTTTTTAGAGACATACAA
CTTCACATTATATCACCAAATAATCTGCGTGGCATATTCTTTCGTGAAAA
TAGGGACATTTTCACCATCAAAGCTGGAATGTTTGGTATTAAGCCAATCA
TTGTGAAAGGAATTTCTGACTCTTCAATTATTGAGCAGAAAAATCATTCT
ATAGTGTTGGCTCACGAATTTAGAATTCTCCAATTTCTTGGTCCCCATCG
TCACCTTATCGATTATTATGGCTTAGTCGAACTCAATGGGATTCCTCAGA
TAGTCTTGGATGATGATTTTAAATTTGCTGGTTTTGAGAGGTTCTACCAA
GAAAACCGTCGCTTTGATATCTACACCATTCAGGCATTGTTTAGAGACAT
AACATCTGTTGTTGAATTCCTCCATGTGAAGGGTGTTATTCACATGAATA
TAAcagaagattcttttgtgttcagTCTCGATGTTTCTGGTCCAGAGTGG
AGGTATTTCCCCATCCTTTGTGATTTCTCCTGTTGTTGTCTGGTCTCTGA
TGTGAAAGTACTGACGCCACAATTGCAGAGCAGATTTCGATCAACAAAAC
ATCTTCCCGTAGAAGTGATGCGTGGAGAAAAATTGCCATCTTTCAATTGT
GACATTTATGCTGTAGCTGTTTTGATGTCACATTTTTCAAACCGTTTGAA
CACTCCTCAAGAAcaacatatttttgatgaaGTTACTATCAAGCTTTTAA
GAAATACTACAGATATTTTTATTGATTCATTGTatgatttcattaaaaac
taaagtatttgaaactttttcttcTTTGCTTGTTTGACTTTCCCTAATTC
CCATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063420-exon-scaffold_389-1491911889:64235..65634 | TCONS_00063420-exon-scaffold_389-1491911889:64235..65634 | Clytia hemisphaerica | exon |
| TCONS_00063420-exon-scaffold_389-1510915933:64235..65634 | TCONS_00063420-exon-scaffold_389-1510915933:64235..65634 | Clytia hemisphaerica | exon |
| TCONS_00063420-exon-scaffold_389-1575043694:64235..65634 | TCONS_00063420-exon-scaffold_389-1575043694:64235..65634 | Clytia hemisphaerica | exon |
| TCONS_00063420-exon-scaffold_389-1491911889:66053..67692 | TCONS_00063420-exon-scaffold_389-1491911889:66053..67692 | Clytia hemisphaerica | exon |
| TCONS_00063420-exon-scaffold_389-1510915933:66053..67692 | TCONS_00063420-exon-scaffold_389-1510915933:66053..67692 | Clytia hemisphaerica | exon |
| TCONS_00063420-exon-scaffold_389-1575043694:66053..67692 | TCONS_00063420-exon-scaffold_389-1575043694:66053..67692 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_389 | supercontig | scaffold_389:64235..67692 + |
Blast
The following BLAST results are available for this feature:
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