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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063419 ID=TCONS_00063419|Name=TCONS_00063419|organism=Clytia hemisphaerica|type=transcript|length=614bp
GAATTTTGGACTCCTCAAGAAAAAAAAGTCGAGAGTCTTCAAGAAAAATG
GTTCAAAGAAGACATATTGAAAGACAATAAATGTGTTCTCAATTACAAAG
GAACATCCAAGATGGAAAGTGGAATCGAACGCATGTTAGGACACAAATTG
TTACTGGGTGGCCCACTCATGGACCAGTATCTTGAGCACATTGGCCatgc
aattttgaaaaaactttcgcaAAAACATTTGACTGGTTATGTACTacctt
taaaggttttcatTCCTAATCAGATTTTTTTGATACTGATGCGTCTTTTT
GTGGCATATGGTTGCGAATCTCAAGATGTATATCCAAAGGTGAGAAAGAG
TTTGACAAGACCCAAACGGAAATTACGAAAAGTTGCTTTGAACAAGCCTC
CGACCAAATCTTTTATTTGGATGAACTCAATGCAAAGTTGTGAAAAAATC
TTTGCTCCAGAAAGATTTGATGGTACAAACTTTTTAGCCAAAAGGGTTTT
TGCTCGAAAATTGTTACCTGGACAAAAGAAACAGCAACAAGTGTACAATG
GTAAAGCAGTGGTAGTTGTTACATCTTCTACCCCGATCAAACTTGAATAC
ATTTATAAAACTGG Run BLAST on NCBI protein sequence of TCONS_00063419-protein >TCONS_00063419-protein ID=TCONS_00063419-protein|Name=TCONS_00063419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
EFWTPQEKKVESLQEKWFKEDILKDNKCVLNYKGTSKMESGIERMLGHKL
LLGGPLMDQYLEHIGHAILKKLSQKHLTGYVLPLKVFIPNQIFLILMRLF
VAYGCESQDVYPKVRKSLTRPKRKLRKVALNKPPTKSFIWMNSMQSCEKI
FAPERFDGTNFLAKRVFARKLLPGQKKQQQVYNGKAVVVVTSSTPIKLEY
IYKT Run BLAST on NCBI transcript from alignment at scaffold_389:62672..64058+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063419 ID=TCONS_00063419|Name=TCONS_00063419|organism=Clytia hemisphaerica|type=transcript|length=1387bp|location=Sequence derived from alignment at scaffold_389:62672..64058+ (Clytia hemisphaerica)
GAATTTTGGACTCCTCAAGAAAAAAAAGTCGAGAGTCTTCAAGAAAAATG
GTTCAAAGAAGACATATTGAAAGACAATAAATGTGTTGTAAGTTTTTGgt
tgaatttttcatttatatatGTGGCCAATAGCAAGAGTAGGGATGGGTGG
GAAACACTAAATTTCTTTGTATATTTCACTATTCTGACTCCTTCTACTCT
GACAACAAAAGTAACAAAACAGCCATGGAATCAGTCACAGAAGTTTGTTG
TCCAAATGGACTTCTCCTATCCTGCTTTATGTgaattatttataattttt
tccaatgTCCTCATCTATTATTTTCATGAGATTTGTTAGGTAACGTAATT
GCTTAGACAGAAgtttttggctaaaatttttggcaaattttcgtAAGGCT
TGATGACTGTTCGGTGATACCAGAcgatgaatttaagtaattccACCAGC
AATAATTATTCGCATACCTAATTTCACCAGCCTAAATTAGGATACCTCCA
TACTTCAGTGGATGCAAGTAAAACCAGCGGGAAATTGGGTATTAAGATTT
GTTCAAATTGGCACGCTAACAACTCTCTCGAAGTAGCACACAGTATTGTT
GGAAATTTTCCTGCGCGGTGTGCTATAAAGTATTTCTACAACTTGAGGTT
TTAATTTTCCGTAATACTGAACAAATGATTTCCGGCCCATGTCTTGGGGT
AAGTAATTTATGCTGGTGGAATTATTTAATTCAATAGACCGTTGCGGTCG
CCTAAAGGACTATAAAACCTTCTAAAAATTCATGTGGGACAATTTTAAAT
AACTAATTTAAGCTTTAAGAATGATTTTTATTGatctttttttcactttt
aattCTACAGCTCAATTACAAAGGAACATCCAAGATGGAAAGTGGAATCG
AACGCATGTTAGGACACAAATTGTTACTGGGTGGCCCACTCATGGACCAG
TATCTTGAGCACATTGGCCatgcaattttgaaaaaactttcgcaAAAACA
TTTGACTGGTTATGTACTacctttaaaggttttcatTCCTAATCAGATTT
TTTTGATACTGATGCGTCTTTTTGTGGCATATGGTTGCGAATCTCAAGAT
GTATATCCAAAGGTGAGAAAGAGTTTGACAAGACCCAAACGGAAATTACG
AAAAGTTGCTTTGAACAAGCCTCCGACCAAATCTTTTATTTGGATGAACT
CAATGCAAAGTTGTGAAAAAATCTTTGCTCCAGAAAGATTTGATGGTACA
AACTTTTTAGCCAAAAGGGTTTTTGCTCGAAAATTGTTACCTGGACAAAA
GAAACAGCAACAAGTGTACAATGGTAAAGCAGTGGTAGTTGTTACATCTT
CTACCCCGATCAAACTTGAATACATTTATAAAACTGG Coding sequence (CDS) from alignment at scaffold_389:62672..64058+ >TCONS_00063419 ID=TCONS_00063419|Name=TCONS_00063419|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_389:62672..64058+ (Clytia hemisphaerica)
GAATTTTGGACTCCTCAAGAAAAAAAAGTCGAGAGTCTTCAAGAAAAATG
GTTCAAAGAAGACATATTGAAAGACAATAAATGTGTTCTCAATTACAAAG
GAACATCCAAGATGGAAAGTGGAATCGAACGCATGTTAGGACACAAATTG
TTACTGGGTGGCCCACTCATGGACCAGTATCTTGAGCACATTGGCCatgc
aattttgaaaaaactttcgcaAAAACATTTGACTGGTTATGTACTacctt
taaaggttttcatTCCTAATCAGATTTTTTTGATACTGATGCGTCTTTTT
GTGGCATATGGTTGCGAATCTCAAGATGTATATCCAAAGGTGAGAAAGAG
TTTGACAAGACCCAAACGGAAATTACGAAAAGTTGCTTTGAACAAGCCTC
CGACCAAATCTTTTATTTGGATGAACTCAATGCAAAGTTGTGAAAAAATC
TTTGCTCCAGAAAGATTTGATGGTACAAACTTTTTAGCCAAAAGGGTTTT
TGCTCGAAAATTGTTACCTGGACAAAAGAAACAGCAACAAGTGTACAATG
GTAAAGCAGTGGTAGTTGTTACATCTTCTACCCCGATCAAACTTGAATAC
ATTTATAAAACTGAATTTTGGACTCCTCAAGAAAAAAAAGTCGAGAGTCT
TCAAGAAAAATGGTTCAAAGAAGACATATTGAAAGACAATAAATGTGTTC
TCAATTACAAAGGAACATCCAAGATGGAAAGTGGAATCGAACGCATGTTA
GGACACAAATTGTTACTGGGTGGCCCACTCATGGACCAGTATCTTGAGCA
CATTGGCCatgcaattttgaaaaaactttcgcaAAAACATTTGACTGGTT
ATGTACTacctttaaaggttttcatTCCTAATCAGATTTTTTTGATACTG
ATGCGTCTTTTTGTGGCATATGGTTGCGAATCTCAAGATGTATATCCAAA
GGTGAGAAAGAGTTTGACAAGACCCAAACGGAAATTACGAAAAGTTGCTT
TGAACAAGCCTCCGACCAAATCTTTTATTTGGATGAACTCAATGCAAAGT
TGTGAAAAAATCTTTGCTCCAGAAAGATTTGATGGTACAAACTTTTTAGC
CAAAAGGGTTTTTGCTCGAAAATTGTTACCTGGACAAAAGAAACAGCAAC
AAGTGTACAATGGTAAAGCAGTGGTAGTTGTTACATCTTCTACCCCGATC
AAACTTGAATACATTTATAAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063419-exon-scaffold_389-1491911889:62672..62758 | TCONS_00063419-exon-scaffold_389-1491911889:62672..62758 | Clytia hemisphaerica | exon |
| TCONS_00063419-exon-scaffold_389-1510915933:62672..62758 | TCONS_00063419-exon-scaffold_389-1510915933:62672..62758 | Clytia hemisphaerica | exon |
| TCONS_00063419-exon-scaffold_389-1575043694:62672..62758 | TCONS_00063419-exon-scaffold_389-1575043694:62672..62758 | Clytia hemisphaerica | exon |
| TCONS_00063419-exon-scaffold_389-1491911889:63532..64058 | TCONS_00063419-exon-scaffold_389-1491911889:63532..64058 | Clytia hemisphaerica | exon |
| TCONS_00063419-exon-scaffold_389-1510915933:63532..64058 | TCONS_00063419-exon-scaffold_389-1510915933:63532..64058 | Clytia hemisphaerica | exon |
| TCONS_00063419-exon-scaffold_389-1575043694:63532..64058 | TCONS_00063419-exon-scaffold_389-1575043694:63532..64058 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_389 | supercontig | scaffold_389:62672..64058 + |
Blast
The following BLAST results are available for this feature:
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