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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063414 ID=TCONS_00063414|Name=TCONS_00063414|organism=Clytia hemisphaerica|type=transcript|length=1332bp
AAagcaattttgaagatttcttaaAAATGGATTTACTCGTTTACTTTTTA
TTGTTCACTACCTATTTCCAATGCCAGTATAAAATTCTAATGGTGGATGG
CATCAAAGATAACCAAGGAACATTCGGTCGCCTTGTTGCGAAAAATCGCG
TTCTTGATGACATGGCATTCCTGGTTAAAATGGTTCATTCCCAAGTAGAA
TGTCAACTCTCTTGTAGTCGTTACCAGAGCTGTCTCTCTTACGCTGTTCA
AGGATTGAATGATGTTGACTTGCAATGCCAACTGTTTGATAACATTGCTG
AAAGCACTGGTAATAATTTGGTGGAATTATCCGATAGCTTTTATTACGAA
ATCGTTCAAGTCTTCCCAAAAACATTTCCAAATATATCATCAAATGAAAG
TCCGAATCAAAAAGAATCATCGATTATAAGTTCTCAGCCACCTAATCCTA
CTTTCATCTATGGCACTAGTTCTTCTACCAATAGCTTACCAAGTGAAGAT
CAAATTACTTTACATTCGTCACGAACAGCTGCAGCACACAATGAACTCTT
TCCATCAACATACTCAGAATTCTCATCTAATACACAATTGCATCCCACCT
CATCTATAGCGCCCAATGTTATCACAGAAGTCAACCGTTCAAAGGTCAAC
AAAAGGACAATCAGTTCTTCCCAAAGCTCACTCCCCCAAGGTGCTAATAT
TTCTTTAGATAATGAAATCAGTTACCCTACACTTTCTTCATCTTCATATA
CGGAAAAGTTAACTCCACCCCTTACTACTGACACTACTGGAAGTTATGGC
ATTACAAAACAATCATCTAGATTTTCAAAACTAGATGACATCCCATCAAG
CATTCAACTATCTCATTTACCAGCGTCGTCACAAAGGGAATCTTCCTCAA
TGCATTTAAGAAGTAACACATCAATACCAAAATTGGATTCTAATATCTCA
AACATAATTGTTAACTCAGGTACATCTAGTCCGTTTCTCCAGACTTCCCA
ATCAGAACCCATTTCACCAATAACATTAGTTAAGGATTCTTTCCAAGATA
AAACCGAAAAGAAAACATCGTCTCGTGCATTACTACTGTCGTCCATGGAA
ACTACCAAATGTCCTGAAACAGCCTCAGTTACCATGGAAACCAGACCAAT
AAAGCCAGATTCGATAAACTCTCATAACACATCTGCATTGTCTGCAATAA
TACGAGCTGAAACGACTCAGGGAAAGACAGATAAATCCTCAAGTTTTACA
ACACGTTTTACAGGTCACTCCACTGGGAAAAGTAGTTCAACGTTGCACAC
CACATCAAGATACGCCAGCCAAACAACGAAAC Run BLAST on NCBI protein sequence of TCONS_00063414-protein >TCONS_00063414-protein ID=TCONS_00063414-protein|Name=TCONS_00063414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
SNFEDFLKMDLLVYFLLFTTYFQCQYKILMVDGIKDNQGTFGRLVAKNRV
LDDMAFLVKMVHSQVECQLSCSRYQSCLSYAVQGLNDVDLQCQLFDNIAE
STGNNLVELSDSFYYEIVQVFPKTFPNISSNESPNQKESSIISSQPPNPT
FIYGTSSSTNSLPSEDQITLHSSRTAAAHNELFPSTYSEFSSNTQLHPTS
SIAPNVITEVNRSKVNKRTISSSQSSLPQGANISLDNEISYPTLSSSSYT
EKLTPPLTTDTTGSYGITKQSSRFSKLDDIPSSIQLSHLPASSQRESSSM
HLRSNTSIPKLDSNISNIIVNSGTSSPFLQTSQSEPISPITLVKDSFQDK
TEKKTSSRALLLSSMETTKCPETASVTMETRPIKPDSINSHNTSALSAII
RAETTQGKTDKSSSFTTRFTGHSTGKSSSTLHTTSRYASQTTK Run BLAST on NCBI transcript from alignment at scaffold_388:138326..139657 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063414 ID=TCONS_00063414|Name=TCONS_00063414|organism=Clytia hemisphaerica|type=transcript|length=1332bp|location=Sequence derived from alignment at scaffold_388:138326..139657 (Clytia hemisphaerica)
GTTTCGTTGTTTGGCTGGCGTATCTTGATGTGGTGTGCAACGTTGAACTA
CTTTTCCCAGTGGAGTGACCTGTAAAACGTGTTGTAAAACTTGAGGATTT
ATCTGTCTTTCCCTGAGTCGTTTCAGCTCGTATTATTGCAGACAATGCAG
ATGTGTTATGAGAGTTTATCGAATCTGGCTTTATTGGTCTGGTTTCCATG
GTAACTGAGGCTGTTTCAGGACATTTGGTAGTTTCCATGGACGACAGTAG
TAATGCACGAGACGATGTTTTCTTTTCGGTTTTATCTTGGAAAGAATCCT
TAACTAATGTTATTGGTGAAATGGGTTCTGATTGGGAAGTCTGGAGAAAC
GGACTAGATGTACCTGAGTTAACAATTATGTTTGAGATATTAGAATCCAA
TTTTGGTATTGATGTGTTACTTCTTAAATGCATTGAGGAAGATTCCCTTT
GTGACGACGCTGGTAAATGAGATAGTTGAATGCTTGATGGGATGTCATCT
AGTTTTGAAAATCTAGATGATTGTTTTGTAATGCCATAACTTCCAGTAGT
GTCAGTAGTAAGGGGTGGAGTTAACTTTTCCGTATATGAAGATGAAGAAA
GTGTAGGGTAACTGATTTCATTATCTAAAGAAATATTAGCACCTTGGGGG
AGTGAGCTTTGGGAAGAACTGATTGTCCTTTTGTTGACCTTTGAACGGTT
GACTTCTGTGATAACATTGGGCGCTATAGATGAGGTGGGATGCAATTGTG
TATTAGATGAGAATTCTGAGTATGTTGATGGAAAGAGTTCATTGTGTGCT
GCAGCTGTTCGTGACGAATGTAAAGTAATTTGATCTTCACTTGGTAAGCT
ATTGGTAGAAGAACTAGTGCCATAGATGAAAGTAGGATTAGGTGGCTGAG
AACTTATAATCGATGATTCTTTTTGATTCGGACTTTCATTTGATGATATA
TTTGGAAATGTTTTTGGGAAGACTTGAACGATTTCGTAATAAAAGCTATC
GGATAATTCCACCAAATTATTACCAGTGCTTTCAGCAATGTTATCAAACA
GTTGGCATTGCAAGTCAACATCATTCAATCCTTGAACAGCGTAAGAGAGA
CAGCTCTGGTAACGACTACAAGAGAGTTGACATTCTACTTGGGAATGAAC
CATTTTAACCAGGAATGCCATGTCATCAAGAACGCGATTTTTCGCAACAA
GGCGACCGAATGTTCCTTGGTTATCTTTGATGCCATCCACCATTAGAATT
TTATACTGGCATTGGAAATAGGTAGTGAACAATAAAAAGTAAACGAGTAA
ATCCATTTttaagaaatcttcaaaattgctTT Coding sequence (CDS) from alignment at scaffold_388:138326..139657 >TCONS_00063414 ID=TCONS_00063414|Name=TCONS_00063414|organism=Clytia hemisphaerica|type=CDS|length=1329bp|location=Sequence derived from alignment at scaffold_388:138326..139657 (Clytia hemisphaerica)
TTTCGTTGTTTGGCTGGCGTATCTTGATGTGGTGTGCAACGTTGAACTAC
TTTTCCCAGTGGAGTGACCTGTAAAACGTGTTGTAAAACTTGAGGATTTA
TCTGTCTTTCCCTGAGTCGTTTCAGCTCGTATTATTGCAGACAATGCAGA
TGTGTTATGAGAGTTTATCGAATCTGGCTTTATTGGTCTGGTTTCCATGG
TAACTGAGGCTGTTTCAGGACATTTGGTAGTTTCCATGGACGACAGTAGT
AATGCACGAGACGATGTTTTCTTTTCGGTTTTATCTTGGAAAGAATCCTT
AACTAATGTTATTGGTGAAATGGGTTCTGATTGGGAAGTCTGGAGAAACG
GACTAGATGTACCTGAGTTAACAATTATGTTTGAGATATTAGAATCCAAT
TTTGGTATTGATGTGTTACTTCTTAAATGCATTGAGGAAGATTCCCTTTG
TGACGACGCTGGTAAATGAGATAGTTGAATGCTTGATGGGATGTCATCTA
GTTTTGAAAATCTAGATGATTGTTTTGTAATGCCATAACTTCCAGTAGTG
TCAGTAGTAAGGGGTGGAGTTAACTTTTCCGTATATGAAGATGAAGAAAG
TGTAGGGTAACTGATTTCATTATCTAAAGAAATATTAGCACCTTGGGGGA
GTGAGCTTTGGGAAGAACTGATTGTCCTTTTGTTGACCTTTGAACGGTTG
ACTTCTGTGATAACATTGGGCGCTATAGATGAGGTGGGATGCAATTGTGT
ATTAGATGAGAATTCTGAGTATGTTGATGGAAAGAGTTCATTGTGTGCTG
CAGCTGTTCGTGACGAATGTAAAGTAATTTGATCTTCACTTGGTAAGCTA
TTGGTAGAAGAACTAGTGCCATAGATGAAAGTAGGATTAGGTGGCTGAGA
ACTTATAATCGATGATTCTTTTTGATTCGGACTTTCATTTGATGATATAT
TTGGAAATGTTTTTGGGAAGACTTGAACGATTTCGTAATAAAAGCTATCG
GATAATTCCACCAAATTATTACCAGTGCTTTCAGCAATGTTATCAAACAG
TTGGCATTGCAAGTCAACATCATTCAATCCTTGAACAGCGTAAGAGAGAC
AGCTCTGGTAACGACTACAAGAGAGTTGACATTCTACTTGGGAATGAACC
ATTTTAACCAGGAATGCCATGTCATCAAGAACGCGATTTTTCGCAACAAG
GCGACCGAATGTTCCTTGGTTATCTTTGATGCCATCCACCATTAGAATTT
TATACTGGCATTGGAAATAGGTAGTGAACAATAAAAAGTAAACGAGTAAA
TCCATTTttaagaaatcttcaaaattgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063414-exon-scaffold_388-1491911889:138326..139657 | TCONS_00063414-exon-scaffold_388-1491911889:138326..139657 | Clytia hemisphaerica | exon |
| TCONS_00063414-exon-scaffold_388-1510915933:138326..139657 | TCONS_00063414-exon-scaffold_388-1510915933:138326..139657 | Clytia hemisphaerica | exon |
| TCONS_00063414-exon-scaffold_388-1575043694:138326..139657 | TCONS_00063414-exon-scaffold_388-1575043694:138326..139657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_388 | supercontig | scaffold_388:138326..139657 . |
Blast
The following BLAST results are available for this feature:
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