TCONS_00063411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063411
Unique NameTCONS_00063411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063411 ID=TCONS_00063411|Name=TCONS_00063411|organism=Clytia hemisphaerica|type=transcript|length=545bp
ATAGCTCACAATCTTCTTCGTCTCTCAAGTCCTATCGTCTGGAAAATCGC
CTATCGTTTGGAACATACTCTCTCTGATACCCTCCATATTGTTTCCGCTA
CCCCCTCATTCGGAGAAGGCCGTCTGAGTACAATCCTCCAATCGCACGTT
CGGAAATCGTCCATCCAACGTCCGTTGTCCTCCCAAATTCATCGTTTCCG
GGATTCACTCTATCCGGAATATTCTCCTACCGTATCGTCACAGATACTCC
ATTTCGTTCAGATACCGCACCCAGCGTCGTATCGCTTTATCGGTATACAC
ACCAAATTGTATACAATCCAAAAATCCATCATTTCGTTGTTGATTCTCCC
GTTGCAAAACGCCACTTCCACCCCGCCTCGTTCTCATACGTGGTTCGCCC
TCAACTGTGGTGCACCCCGCCACCAATCGTGTCCCGCCACCAATCTAGTC
CACCCTCATCCTCAATAGTGGTCTACTTTATCAATCGCAGTTCACTTTCG
TTTGAATTGTCTTCCGCCCTCGATTATTAATCGCTACCGGCCGTC
Run BLAST on NCBI

transcript from alignment at scaffold_388:109075..109619

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063411 ID=TCONS_00063411|Name=TCONS_00063411|organism=Clytia hemisphaerica|type=transcript|length=545bp|location=Sequence derived from alignment at scaffold_388:109075..109619 (Clytia hemisphaerica)
GACGGCCGGTAGCGATTAATAATCGAGGGCGGAAGACAATTCAAACGAAA
GTGAACTGCGATTGATAAAGTAGACCACTATTGAGGATGAGGGTGGACTA
GATTGGTGGCGGGACACGATTGGTGGCGGGGTGCACCACAGTTGAGGGCG
AACCACGTATGAGAACGAGGCGGGGTGGAAGTGGCGTTTTGCAACGGGAG
AATCAACAACGAAATGATGGATTTTTGGATTGTATACAATTTGGTGTGTA
TACCGATAAAGCGATACGACGCTGGGTGCGGTATCTGAACGAAATGGAGT
ATCTGTGACGATACGGTAGGAGAATATTCCGGATAGAGTGAATCCCGGAA
ACGATGAATTTGGGAGGACAACGGACGTTGGATGGACGATTTCCGAACGT
GCGATTGGAGGATTGTACTCAGACGGCCTTCTCCGAATGAGGGGGTAGCG
GAAACAATATGGAGGGTATCAGAGAGAGTATGTTCCAAACGATAGGCGAT
TTTCCAGACGATAGGACTTGAGAGACGAAGAAGATTGTGAGCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039742XLOC_039742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063411-exon-scaffold_388-1491911889:109075..109619TCONS_00063411-exon-scaffold_388-1491911889:109075..109619Clytia hemisphaericaexon
TCONS_00063411-exon-scaffold_388-1510915933:109075..109619TCONS_00063411-exon-scaffold_388-1510915933:109075..109619Clytia hemisphaericaexon
TCONS_00063411-exon-scaffold_388-1575043694:109075..109619TCONS_00063411-exon-scaffold_388-1575043694:109075..109619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_388supercontigscaffold_388:109075..109619 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.668028	0.650639	0.444124	0.282859	0.157724	0.516164	0.280378	0.283031	0.374904	0.869994	0.123685	0.502569	0.0773185	0.306395	0.12681	0.323562	0.0986556	0.318716	0	0	0	0	0	0	0.31705	0.355609	0.803666	0	0.279882	0.139533
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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