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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063410 ID=TCONS_00063410|Name=TCONS_00063410|organism=Clytia hemisphaerica|type=transcript|length=994bp
GTCCGTCCTCATTTGCAATCGTTGTTTGTTCTCGTTATCAATCGTGATTC
AGCCTTGTTATCAATCGTCGGCCGCCCTTTTCATTAGTGGTCTACCCTCG
TTCCCAATCGGGACCGCCCTTGTGTCCAATCGAGCGTCTATTCAATACCG
CCCGTCGTATTCGTCTGTGGTACACGCAACTACCACATCAGTTGACTAAT
CCGTGGACTACCTGTTCTTGATTCAACCTTGTTTCATCACCGTCCAGACC
ATCATGTCAATCCGGAGATCTCAAAGAATTGCAGGACAAGGGCCTGATCA
TTCCACTGACCTAGCCAAACTGATATCTCTAAGGAACACTCGAAGAGGTC
TTCTGGGATATCTTNAATATCTTACCTATGAAACTGACGAAAGAAGGATA
CAAGAATGCACAGAGACTGAAGCTAGAGAGGCTAATCGCATCGCTGAAAT
AGAGCATGAGATTCGTAGGAGATTGAGAACACCAAACCTTTCCAACACTA
CACCTGATACAAGTCTGTATGATGTAGATCCATCTGAAACTTCCAACATA
TTGAGTCATGATAAACGTACTAACGTATTCAATCCTCATATTCGTATACC
TGTTGGCTCCAGTGGAAACTCACCTACTGTTTCTCATATCGAATCACCTC
CTAACTCAGCTATTCACCACTCACCTGTCCATTCACAACCTCTTCAACGA
AGTCTATCTCAGGTGAGATTTACTCCATGTCCACCTTCGGTGTCTTCGGT
CACAGCAAAGCCACGAAGCAGCTTCCGACGCCTACGCCAAAAGGCATCTA
CAACATCAGTTGATAATCGTTCAGAGCCTTCAACTGCCACTGTGACTCTT
GCTAATGCTAATTCTTACACAAAACCCAAACCTCCATACCTCGTCTTCAG
ACCAGTCGACCAATTCATTGACGAATTGACAGAAGGAGAGGAAACATGCC
TCGCCGGCTTATCAAACCCATTAACAGCAAATTCTGCGCTGAGN Run BLAST on NCBI protein sequence of TCONS_00063410-protein >TCONS_00063410-protein ID=TCONS_00063410-protein|Name=TCONS_00063410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MSIRRSQRIAGQGPDHSTDLAKLISLRNTRRGLLGYLXYLTYETDERRIQ
ECTETEAREANRIAEIEHEIRRRLRTPNLSNTTPDTSLYDVDPSETSNIL
SHDKRTNVFNPHIRIPVGSSGNSPTVSHIESPPNSAIHHSPVHSQPLQRS
LSQVRFTPCPPSVSSVTAKPRSSFRRLRQKASTTSVDNRSEPSTATVTLA
NANSYTKPKPPYLVFRPVDQFIDELTEGEETCLAGLSNPLTANSALX Run BLAST on NCBI transcript from alignment at scaffold_388:108024..109017 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063410 ID=TCONS_00063410|Name=TCONS_00063410|organism=Clytia hemisphaerica|type=transcript|length=994bp|location=Sequence derived from alignment at scaffold_388:108024..109017 (Clytia hemisphaerica)
NCTCAGCGCAGAATTTGCTGTTAATGGGTTTGATAAGCCGGCGAGGCATG
TTTCCTCTCCTTCTGTCAATTCGTCAATGAATTGGTCGACTGGTCTGAAG
ACGAGGTATGGAGGTTTGGGTTTTGTGTAAGAATTAGCATTAGCAAGAGT
CACAGTGGCAGTTGAAGGCTCTGAACGATTATCAACTGATGTTGTAGATG
CCTTTTGGCGTAGGCGTCGGAAGCTGCTTCGTGGCTTTGCTGTGACCGAA
GACACCGAAGGTGGACATGGAGTAAATCTCACCTGAGATAGACTTCGTTG
AAGAGGTTGTGAATGGACAGGTGAGTGGTGAATAGCTGAGTTAGGAGGTG
ATTCGATATGAGAAACAGTAGGTGAGTTTCCACTGGAGCCAACAGGTATA
CGAATATGAGGATTGAATACGTTAGTACGTTTATCATGACTCAATATGTT
GGAAGTTTCAGATGGATCTACATCATACAGACTTGTATCAGGTGTAGTGT
TGGAAAGGTTTGGTGTTCTCAATCTCCTACGAATCTCATGCTCTATTTCA
GCGATGCGATTAGCCTCTCTAGCTTCAGTCTCTGTGCATTCTTGTATCCT
TCTTTCGTCAGTTTCATAGGTAAGATATTNAAGATATCCCAGAAGACCTC
TTCGAGTGTTCCTTAGAGATATCAGTTTGGCTAGGTCAGTGGAATGATCA
GGCCCTTGTCCTGCAATTCTTTGAGATCTCCGGATTGACATGATGGTCTG
GACGGTGATGAAACAAGGTTGAATCAAGAACAGGTAGTCCACGGATTAGT
CAACTGATGTGGTAGTTGCGTGTACCACAGACGAATACGACGGGCGGTAT
TGAATAGACGCTCGATTGGACACAAGGGCGGTCCCGATTGGGAACGAGGG
TAGACCACTAATGAAAAGGGCGGCCGACGATTGATAACAAGGCTGAATCA
CGATTGATAACGAGAACAAACAACGATTGCAAATGAGGACGGAC Coding sequence (CDS) from alignment at scaffold_388:108024..109017 >TCONS_00063410 ID=TCONS_00063410|Name=TCONS_00063410|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_388:108024..109017 (Clytia hemisphaerica)
NCTCAGCGCAGAATTTGCTGTTAATGGGTTTGATAAGCCGGCGAGGCATG
TTTCCTCTCCTTCTGTCAATTCGTCAATGAATTGGTCGACTGGTCTGAAG
ACGAGGTATGGAGGTTTGGGTTTTGTGTAAGAATTAGCATTAGCAAGAGT
CACAGTGGCAGTTGAAGGCTCTGAACGATTATCAACTGATGTTGTAGATG
CCTTTTGGCGTAGGCGTCGGAAGCTGCTTCGTGGCTTTGCTGTGACCGAA
GACACCGAAGGTGGACATGGAGTAAATCTCACCTGAGATAGACTTCGTTG
AAGAGGTTGTGAATGGACAGGTGAGTGGTGAATAGCTGAGTTAGGAGGTG
ATTCGATATGAGAAACAGTAGGTGAGTTTCCACTGGAGCCAACAGGTATA
CGAATATGAGGATTGAATACGTTAGTACGTTTATCATGACTCAATATGTT
GGAAGTTTCAGATGGATCTACATCATACAGACTTGTATCAGGTGTAGTGT
TGGAAAGGTTTGGTGTTCTCAATCTCCTACGAATCTCATGCTCTATTTCA
GCGATGCGATTAGCCTCTCTAGCTTCAGTCTCTGTGCATTCTTGTATCCT
TCTTTCGTCAGTTTCATAGGTAAGATATTNAAGATATCCCAGAAGACCTC
TTCGAGTGTTCCTTAGAGATATCAGTTTGGCTAGGTCAGTGGAATGATCA
GGCCCTTGTCCTGCAATTCTTTGAGATCTCCGGATTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063410-exon-scaffold_388-1491911889:108024..109017 | TCONS_00063410-exon-scaffold_388-1491911889:108024..109017 | Clytia hemisphaerica | exon |
| TCONS_00063410-exon-scaffold_388-1510915933:108024..109017 | TCONS_00063410-exon-scaffold_388-1510915933:108024..109017 | Clytia hemisphaerica | exon |
| TCONS_00063410-exon-scaffold_388-1575043694:108024..109017 | TCONS_00063410-exon-scaffold_388-1575043694:108024..109017 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_388 | supercontig | scaffold_388:108024..109017 . |
Blast
The following BLAST results are available for this feature:
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