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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063406 ID=TCONS_00063406|Name=TCONS_00063406|organism=Clytia hemisphaerica|type=transcript|length=720bp
gaatttgatgatttttattctcttaaaaaaagttatctttacTATCATCC
ATACTCCTATaagtatttaaaaaagatctatGTTCTGTATATTGAAATTT
AGTGTTCATATATTTAATCAGTTTGTGAATTTCCATCATGAAAAGGAATA
TTCCAGTAATACAATCTGGACCGACATCTTGAAACAAACATATTTGTGGG
TTCTTCTTAGTAATTGTTATTCCAACCCTAACATTCGTATTAGGGATTGT
CACATACGTAAATTCGGTGCCACTTCCAGTAGTCTTTTGAAATGAATCGA
ATCCCATCTCTTCAATTTCTTCCTTGAATTCATCAACCAAGTCATACAAC
GAAAATACTTGAGTTGCCGTGAGAAATTTTGTGTGTGCGATTACTTCGTT
CATTTCAACCTCATCTAGTAGCTTTAAAATTGCCAGTAAAAGTTTCTTAA
TGTTATCTACCCCCTTCATACCAAATCTTCTTAAGCCTTCAGGTGCGTCT
GGATAAAAAGAACGTATAACCAATGTATCCGCCGGATCTTCATCACGTGC
ATATACCACCTTGTGACTGCTTAAACTCAATGCGTCTTTCTTCTCACTaa
tctttttgtctttatttgGTGTAGAAGTTATCATTTTCTTAGTGTAACCA
AAATCTTGAATATCAGTTTGTtttctcttcattttcaaagttacAAATTT
GATATGATTCCAAGttaaat Run BLAST on NCBI protein sequence of TCONS_00063406-protein >TCONS_00063406-protein ID=TCONS_00063406-protein|Name=TCONS_00063406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
LTWNHIKFVTLKMKRKQTDIQDFGYTKKMITSTPNKDKKISEKKDALSLS
SHKVVYARDEDPADTLVIRSFYPDAPEGLRRFGMKGVDNIKKLLLAILKL
LDEVEMNEVIAHTKFLTATQVFSLYDLVDEFKEEIEEMGFDSFQKTTGSG
TEFTYVTIPNTNVRVGITITKKNPQICLFQDVGPDCITGIFLFMMEIHKL
IKYMNTKFQYTEHRSFLNTYRSMDDSKDNFF Run BLAST on NCBI transcript from alignment at scaffold_388:86320..87039 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063406 ID=TCONS_00063406|Name=TCONS_00063406|organism=Clytia hemisphaerica|type=transcript|length=720bp|location=Sequence derived from alignment at scaffold_388:86320..87039 (Clytia hemisphaerica)
atttaaCTTGGAATCATATCAAATTTgtaactttgaaaatgaagagaaaA
CAAACTGATATTCAAGATTTTGGTTACACTAAGAAAATGATAACTTCTAC
ACcaaataaagacaaaaagattAGTGAGAAGAAAGACGCATTGAGTTTAA
GCAGTCACAAGGTGGTATATGCACGTGATGAAGATCCGGCGGATACATTG
GTTATACGTTCTTTTTATCCAGACGCACCTGAAGGCTTAAGAAGATTTGG
TATGAAGGGGGTAGATAACATTAAGAAACTTTTACTGGCAATTTTAAAGC
TACTAGATGAGGTTGAAATGAACGAAGTAATCGCACACACAAAATTTCTC
ACGGCAACTCAAGTATTTTCGTTGTATGACTTGGTTGATGAATTCAAGGA
AGAAATTGAAGAGATGGGATTCGATTCATTTCAAAAGACTACTGGAAGTG
GCACCGAATTTACGTATGTGACAATCCCTAATACGAATGTTAGGGTTGGA
ATAACAATTACTAAGAAGAACCCACAAATATGTTTGTTTCAAGATGTCGG
TCCAGATTGTATTACTGGAATATTCCTTTTCATGATGGAAATTCACAAAC
TGATTAAATATATGAACACTAAATTTCAATATACAGAACatagatctttt
ttaaatacttATAGGAGTATGGATGATAgtaaagataactttttttaaga
gaataaaaatcatcaaattc Coding sequence (CDS) from alignment at scaffold_388:86320..87039 >TCONS_00063406 ID=TCONS_00063406|Name=TCONS_00063406|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_388:86320..87039 (Clytia hemisphaerica)
ttaaCTTGGAATCATATCAAATTTgtaactttgaaaatgaagagaaaACA
AACTGATATTCAAGATTTTGGTTACACTAAGAAAATGATAACTTCTACAC
caaataaagacaaaaagattAGTGAGAAGAAAGACGCATTGAGTTTAAGC
AGTCACAAGGTGGTATATGCACGTGATGAAGATCCGGCGGATACATTGGT
TATACGTTCTTTTTATCCAGACGCACCTGAAGGCTTAAGAAGATTTGGTA
TGAAGGGGGTAGATAACATTAAGAAACTTTTACTGGCAATTTTAAAGCTA
CTAGATGAGGTTGAAATGAACGAAGTAATCGCACACACAAAATTTCTCAC
GGCAACTCAAGTATTTTCGTTGTATGACTTGGTTGATGAATTCAAGGAAG
AAATTGAAGAGATGGGATTCGATTCATTTCAAAAGACTACTGGAAGTGGC
ACCGAATTTACGTATGTGACAATCCCTAATACGAATGTTAGGGTTGGAAT
AACAATTACTAAGAAGAACCCACAAATATGTTTGTTTCAAGATGTCGGTC
CAGATTGTATTACTGGAATATTCCTTTTCATGATGGAAATTCACAAACTG
ATTAAATATATGAACACTAAATTTCAATATACAGAACatagatctttttt
aaatacttATAGGAGTATGGATGATAgtaaagataactttttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063406-exon-scaffold_388-1491911889:86320..87039 | TCONS_00063406-exon-scaffold_388-1491911889:86320..87039 | Clytia hemisphaerica | exon |
| TCONS_00063406-exon-scaffold_388-1510915933:86320..87039 | TCONS_00063406-exon-scaffold_388-1510915933:86320..87039 | Clytia hemisphaerica | exon |
| TCONS_00063406-exon-scaffold_388-1575043694:86320..87039 | TCONS_00063406-exon-scaffold_388-1575043694:86320..87039 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_388 | supercontig | scaffold_388:86320..87039 . |
Blast
The following BLAST results are available for this feature:
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