TCONS_00063399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063399
Unique NameTCONS_00063399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063399 ID=TCONS_00063399|Name=TCONS_00063399|organism=Clytia hemisphaerica|type=transcript|length=288bp
ATTTAGGAATATAAAATGCTAGAACAATgttttagataaaataaaataaa
tattaacataaaataaatatatcaaaaggGGAACGCTAGAATCGCTGGTA
GGCTAGAAAACACAAGAAGAGTGAGTCCAAATATATAGCAAgtgattgaa
aataaatgacCTTAGAAAATAGACTAGGCTGTAAATGCTAAAGACTACAC
GTAAGTATCAGATACTAGATCGACTGTGTTGATTAAGTTTGTGACTCGAG
GTTGAATTGAATTAGCTTAGAGATTTGGCTAGCGCCCT
Run BLAST on NCBI

transcript from alignment at scaffold_388:46731..47018

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063399 ID=TCONS_00063399|Name=TCONS_00063399|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at scaffold_388:46731..47018 (Clytia hemisphaerica)
AGGGCGCTAGCCAAATCTCTAAGCTAATTCAATTCAACCTCGAGTCACAA
ACTTAATCAACACAGTCGATCTAGTATCTGATACTTACGTGTAGTCTTTA
GCATTTACAGCCTAGTCTATTTTCTAAGgtcatttattttcaatcacTTG
CTATATATTTGGACTCACTCTTCTTGTGTTTTCTAGCCTACCAGCGATTC
TAGCGTTCCccttttgatatatttattttatgttaatatttattttattt
tatctaaaacATTGTTCTAGCATTTTATATTCCTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039730XLOC_039730Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063399-exon-scaffold_388-1491911889:46731..47018TCONS_00063399-exon-scaffold_388-1491911889:46731..47018Clytia hemisphaericaexon
TCONS_00063399-exon-scaffold_388-1510915933:46731..47018TCONS_00063399-exon-scaffold_388-1510915933:46731..47018Clytia hemisphaericaexon
TCONS_00063399-exon-scaffold_388-1575043694:46731..47018TCONS_00063399-exon-scaffold_388-1575043694:46731..47018Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_388supercontigscaffold_388:46731..47018 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84266	0.435768	1.28017	3.99231	1.61584	0.476205	1.49422	2.07222	3.19737	1.43254	2.13957	4.0716	2.93377	1.78172	0.901947	1.57454	0.570091	1.16471	3.47993	2.35928	3.87445	4.38479	0.938016	1.42461	1.08041	0.428195	1.15088	4.3369	1.98396	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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