TCONS_00063392 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063392
Unique Name	TCONS_00063392
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	861

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_388:17156..20854-

transcript sequence

>TCONS_00063392 ID=TCONS_00063392|Name=TCONS_00063392|organism=Clytia hemisphaerica|type=transcript|length=861bp
NNCTACAATCAACGAACGAGCTAAATGGCGCCATCCAATACGGAACACTA
AAGAAGGGGATTTAGTTGTCATCAGCGAAAAGGACATCCCAAGATACAAA
TGGCCATTGGCACGCGTTGTTAGTGTCATCACATCAGATGATGGCATCAC
AAGGATTGCAAAAGTCAAGACGTCCGACGGTTCGATATACACTAGGCCAA
CCGGTAGCCTAGGCTTGTTGGAAGACGGAACCTCATCCAATTGACGATTG
CCCTGTCATCGAGTTAAGCAAAAACATATGCTTATTACGTTGCGTTAATA
AATATCACCAATGGTACACCTTACGTTGCTAAGGTACTATCAACACAAGT
TCGTCCCTGAACTTGAAGTTATCAATTGTACACCTTACGTTGCTAAGGTA
CTATCAACAGAAGTTCGTCCCTGAACTTGAAGTCATCAATTGTACACCTT
ACGTTGCTAAGATACTATCAACAGAAGTTCGTCCCTGAACTTGAAGTCGT
CAATTGTGCACCTTACGTTGCTAAGGTACTATCCACGAAGGTTCGCCCTT
GAACTTGAAGTCATCAATGAAACGCCTTGCTTTGCTAGGGCATTATCATC
AGAAGTTCGtcttgaacttgagggaatcatcAGATGTTCACCCTACATCA
AATCATCAACTGTTTCAACGGTCATCTTCACAGTTCGCCACGAAATTTTG
GTACGACTACCACCGTGTTGTATATCATGAGCTGAATAGTCCGATTGATA
GACTGAATGAACTCTTGGTTCTTCCCCTTTTGGGTGGGAGTGTTTtggat
aatgtgcttataattGAATTGTTTTGGTTGTGACGTATGAGCTCGATAAT
GACAAGATGAT

Run BLAST on NCBI

transcript from alignment at scaffold_388:17156..20854-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063392 ID=TCONS_00063392|Name=TCONS_00063392|organism=Clytia hemisphaerica|type=transcript|length=3699bp|location=Sequence derived from alignment at scaffold_388:17156..20854- (Clytia hemisphaerica)
NNCTACAATCAACGAACGAGCTAAATGGCGCCATCCAATACGGAACACTA
AAGAAGGGGATTTAGTTGTCATCAGCGAAAAGGACATCCCAAGATACAAA
TGGCCATTGGCACGCGTTGTTAGTGTCATCACATCAGATGATGGCATCAC
AAGGATTGCAAAAGTCAAGACGTCCGACGGTTCGATATACACTAGGCCAA
CCGGTAGCCTAGGCTTGTTGGAAGACGGAACCTCATCCAATTGACGATTG
CCCTGTCATCGAGTTAAGCAAAAACATATGCTTATTACGTTGCGTTAATA
AATATCACCAATGGTACACCTTACGTTGCTAAGGTACTATCAACACAAGT
TCGTCCCTGAACTTGAAGTTATCAATTGTACACCTTACGTTGCTAAGGTA
CTATCAACAGAAGTTCGTCCCTGAACTTGAAGTCATCAATTGTACACCTT
ACGTTGCTAAGATACTATCAACAGAAGTTCGTCCCTGAACTTGAAGTCGT
CAATTGTGCACCTTACGTTGCTAAGGTACTATCCACGAAGGTTCGCCCTT
GAACTTGAAGTCATCAATGAAACGCCTTGCTTTGCTAGGGCACTATCATC
AGAAGTTCGCCCCTGAACTTTGAAGTTACCATCAATGAAACAAGGCCCTG
TACCAATTGTTCGCCTTGTTTCTACAAAAGTGCTATCACCAGAAGTTCAT
TGAACGTGACGCAATCATCAGTCGTTCGCCTGGAACCAGGCATTATCATC
AGAAGTTCGTCTTGAACTTGAGGGAATCATCAGATGTTCACCCTACATCA
AATCATCAACTGTTTCAACGGTCATCTTCACAGTTCGCCACGAAATTTTG
GTACGACTACCACCGTGTTGTATATAATGAGCTGAATAGTCCGATTGATA
GACTGAATGAACTCTTGGTTCTTCCCCTTTTGGGTGGGAGTGTTTTGGAT
AATGTGCTTATAACTGATTTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTGTACATTATTTTACCTAGTCGACATTTTTCTTTCATAGGCCTATGTAC
ATATTTTTAGTTTTTGAACTTTGTGTTTTTAGCTTGAACAACAATCAACA
AGATTCCTACGTTCCAAGATTTTTGACTCAACTATCCCTAACANTCCTAC
GTTCCAAGATTTTTGACTCAACTATCCCTAACATCTTCAAGAAAATATTT
GGGAATCAAGTGGACAACAATCAAGTTTTGGAGGACAAAGTTTTGGTGGG
ACAATCAAGTGGAGAACTTGGACAATGCTGAGAGGAAGAGACACATGTCA
GAGGTATACCTTAAACTTTGGCTTGGAAATTTGAAGATAGCTCACAATCT
TCTTCGTCTCTCAAGTCCTATCGTCTGGAAAATCGCCTATCGTTTGGAAC
ATACTCTCTCTGATACCCTCCATATTGTTTCCGCTACCCCCTCNCTATCG
TCTGGAAAATCGCCTATCGTTTGGAACATACTCTCTCTGATACCCTCCAT
ATTGTTTCCGCTACCCTCTCATTCGGAAAAGGCCGTCCGAATATCATCCT
CCAATCGCACGTTCGGAAATCGTCTATCCAACGCCCGTTGTCCTCCCAAA
TTTATCGTTTCCGGGATTCACTCTATCCGGAATTCTCTCCTACCGTATCG
TCACAGATACTCCATTTCGTTCAGANTTCACTGAGGAAGCACTTCACACG
TTCCTCCTTGAAGTTGAATCAACTATCAATTCGCGACCACTCACACCACT
GAGTGACAACATCAACGATTTTGAAGCTCTCACCCCTAACCACTTTCTAT
TAGGAAGAGCTTCACCCAATCTTCCAATCATTTATAACGCTCAACAAAAC
AACCTGAAGAGCAAGTGGAAGTAGGTCCAATCAACACTTGACGAATTTTG
GAAGAGATGGGCAAAGGAGTACCTACCTACAATCAACGAACGAGCTAAAT
GGCGCCATCCAATACGGAACACTAAAGAAGGGGATTTAGTCGTCATCAGC
GAAAAGGACATCCCAAGAAACAAATGGCCATTGGCACGCGTTGTTAGTGT
CATCACATCAGATGATGGCATCACAAGGATTGCAAAGGTCAAGACGTCTG
ACGGTTCGATATACACTAGGCCAACCGGTAGCCTAGGCTTGTTGGAAGAC
GGAACCTCATCCAATTGACGATTGCCCTGTCACCGAGTTAAGCAAAAACA
TATGCTTATTATGTTGTGTTAATAATTATCACCAATGGTACACCTTACGT
TGCTAAGGTACTATCAACAGAAGTTCGTCCCTGAACTTGAAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTGCTAAGGTACTATCCACAAAGGTTCGCCCTTGAACTTGAAGTCATCAA
TGAAACGCCTTGCTTTGCTAGGGCACTATCATCAGAAGTTCGCCCCTGAA
CTTTGAAGCTACCACCAATGAAACAAGACCCTATTGGGGTACCAATTGTT
CGCCTTGTTCCTACCGAAGTGCTATCACTAGAAGTTCATTGAACGTGACG
CAATCATCAGCCGTTCGCCTGAAACCAGGCATTATCATCAGAAGTTCGTC
TTGAACTTGAGGGAATCATCAGATGTTCACCCTACATCAAATCATCAACT
GTTCGACGGTCATCTTCACAGTTCACCACGAATTTTGGTAACTATTACCA
CCGTGTTGTACATCATGAGCTGAATAGTCCGATTGATAGACTGAATGAAC
TCTTGGTTCTTCCCCTTTTGGGTGGGAGTGTTTTGGATAATGTGCTTATA
ATTGAATTGTTTTGGTTGTGACGTATGAGCTCGATAATGACAAGATGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039724	XLOC_039724	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00063392-exon-scaffold_388-1575043694:20266..20854	TCONS_00063392-exon-scaffold_388-1575043694:20266..20854	Clytia hemisphaerica	exon
TCONS_00063392-exon-scaffold_388-1575043694:19982..20115	TCONS_00063392-exon-scaffold_388-1575043694:19982..20115	Clytia hemisphaerica	exon
TCONS_00063392-exon-scaffold_388-1575043694:17156..17293	TCONS_00063392-exon-scaffold_388-1575043694:17156..17293	Clytia hemisphaerica	exon
TCONS_00063392-exon-scaffold_388-1510915933:20266..20854	TCONS_00063392-exon-scaffold_388-1510915933:20266..20854	Clytia hemisphaerica	exon
TCONS_00063392-exon-scaffold_388-1510915933:19982..20115	TCONS_00063392-exon-scaffold_388-1510915933:19982..20115	Clytia hemisphaerica	exon
TCONS_00063392-exon-scaffold_388-1510915933:17156..17293	TCONS_00063392-exon-scaffold_388-1510915933:17156..17293	Clytia hemisphaerica	exon
TCONS_00063392-exon-scaffold_388-1491911889:20266..20854	TCONS_00063392-exon-scaffold_388-1491911889:20266..20854	Clytia hemisphaerica	exon
TCONS_00063392-exon-scaffold_388-1491911889:19982..20115	TCONS_00063392-exon-scaffold_388-1491911889:19982..20115	Clytia hemisphaerica	exon
TCONS_00063392-exon-scaffold_388-1491911889:17156..17293	TCONS_00063392-exon-scaffold_388-1491911889:17156..17293	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_388	supercontig	scaffold_388:17156..20854 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.51149	2.69657	1.17887	0.825401	5.89604	6.07226	3.13445	3.17936	0.864588	4.56488	2.89903	2.36687	0.97659	1.01566	0.569799	0.931734	0.313059	1.00386	0	0.178194	1.52409	1.22606	0.752229	1.07972	1.05664	1.49144	1.83248	1.23125	0.534844	0.837643

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00063392 vs. Swiss-Prot (Human)

BLAST of TCONS_00063392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00063392 (transcript) - C. hemisphaerica