TCONS_00063388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063388
Unique NameTCONS_00063388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063388 ID=TCONS_00063388|Name=TCONS_00063388|organism=Clytia hemisphaerica|type=transcript|length=276bp
ATCTAATTGATGGATACACAGTCGTAAACCACACCAATACTGAGAACAAT
ACAGGACGTGGTATCGTCATCCTAGGACATACCAGTGTAGAACACCTTAC
AGTTGACATTGAATGTCCTGTAGCACTGGAGGAGGCGTGCATCATTGAAG
TACGTCTGGCTGGAAAAGATATGCTTGCTTTGCATGCGTCTACCGCAGTC
CAACGAATCAATCAAACTCTGGAGAAAATAATGCCAATCTTAACCAGCTC
TTACGAATTATATCAGAAGATAAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_387:106027..106302

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063388 ID=TCONS_00063388|Name=TCONS_00063388|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at scaffold_387:106027..106302 (Clytia hemisphaerica)
CTCTTATCTTCTGATATAATTCGTAAGAGCTGGTTAAGATTGGCATTATT
TTCTCCAGAGTTTGATTGATTCGTTGGACTGCGGTAGACGCATGCAAAGC
AAGCATATCTTTTCCAGCCAGACGTACTTCAATGATGCACGCCTCCTCCA
GTGCTACAGGACATTCAATGTCAACTGTAAGGTGTTCTACACTGGTATGT
CCTAGGATGACGATACCACGTCCTGTATTGTTCTCAGTATTGGTGTGGTT
TACGACTGTGTATCCATCAATTAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039722XLOC_039722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063388-exon-scaffold_387-1491911889:106027..106302TCONS_00063388-exon-scaffold_387-1491911889:106027..106302Clytia hemisphaericaexon
TCONS_00063388-exon-scaffold_387-1510915933:106027..106302TCONS_00063388-exon-scaffold_387-1510915933:106027..106302Clytia hemisphaericaexon
TCONS_00063388-exon-scaffold_387-1575043694:106027..106302TCONS_00063388-exon-scaffold_387-1575043694:106027..106302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_387supercontigscaffold_387:106027..106302 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.89318	3.71701	2.10816	0.703176	1.66698	0.670379	1.2552	0	1.6328	1.58483	2.43088	2.77429	6.48253	1.3614	2.22421	2.74004	0.401208	2.21716	0	1.51244	1.50742	1.19572	1.00445	1.67951	2.99784	0	0.763049	0.991453	0.58965
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top