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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063380 ID=TCONS_00063380|Name=TCONS_00063380|organism=Clytia hemisphaerica|type=transcript|length=830bp
TTAAGAATGTGTACCGTAACATCGTACGGCAAATTTTGGATGTTATCTGA
TGTCATCATTGTTCGCGTGTCCAGCCATTTGCATTTCGGAAAGTTCCATT
CGCCAACTGAGAATGTCAAAAACAGATCAGGAAAGCCGTACTGCCTTGTA
GCATCTATCAGGAACAAGTGGTCGTATTGCCATTTGGTGGAACAGAATGA
TTTCCCTTCCAAAGATTGTCTCGGTGTACATCTGAATCTCTTCCCAGATT
CAACAGCACCGCAAACAGTTTTGTACAACCATCTATCGAATTGGTACTGC
AGTAGCTCATAGTCTTGACTAAAATCGATTATCCTGGACATACACTTAGC
atgaaacattttctttgctgaAATACGATTTGTTTTGCCGTCAAGTGCAC
TTTCGCAAAACTCTTCTCTTACATACCATAAAGGCCACATCGCCATCTCC
ACATGTTTCATTTTAAATACTTCATAATAAGGAATGTTAGTGTTACCTGA
TATCATTCTCTCCGATGCCCAAGTGTGCCAATAATTATATTGTTCATTTT
GCATAAGTGCTTCAAATTTTCTTGTCAGCTCTTCACGTCTTTGTTCGTCG
TCCACAGCAGCAATTTTATCTTGGACCGCTTGCTTGATGTAAAGTTGAAA
CGGCTTGACTCGTTTTCGGTAACCGTGATGAGCGCGCGTATACGGGCCTA
CGTCTATACTGAAAACAGCCAGGTTGCGTTGGTCTTCTTTTGAGAATACA
CCGATGTCCGTGTAATCCGTGTCTCTCGGGACGGGATACTTCGATTTGCA
ATTGCACATCCGTTTATTGGTCGTTGTTTT Run BLAST on NCBI protein sequence of TCONS_00063380-protein >TCONS_00063380-protein ID=TCONS_00063380-protein|Name=TCONS_00063380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
KTTTNKRMCNCKSKYPVPRDTDYTDIGVFSKEDQRNLAVFSIDVGPYTRA
HHGYRKRVKPFQLYIKQAVQDKIAAVDDEQRREELTRKFEALMQNEQYNY
WHTWASERMISGNTNIPYYEVFKMKHVEMAMWPLWYVREEFCESALDGKT
NRISAKKMFHAKCMSRIIDFSQDYELLQYQFDRWLYKTVCGAVESGKRFR
CTPRQSLEGKSFCSTKWQYDHLFLIDATRQYGFPDLFLTFSVGEWNFPKC
KWLDTRTMMTSDNIQNLPYDVTVHIL Run BLAST on NCBI transcript from alignment at scaffold_387:8298..9127 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063380 ID=TCONS_00063380|Name=TCONS_00063380|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at scaffold_387:8298..9127 (Clytia hemisphaerica)
AAAACAACGACCAATAAACGGATGTGCAATTGCAAATCGAAGTATCCCGT
CCCGAGAGACACGGATTACACGGACATCGGTGTATTCTCAAAAGAAGACC
AACGCAACCTGGCTGTTTTCAGTATAGACGTAGGCCCGTATACGCGCGCT
CATCACGGTTACCGAAAACGAGTCAAGCCGTTTCAACTTTACATCAAGCA
AGCGGTCCAAGATAAAATTGCTGCTGTGGACGACGAACAAAGACGTGAAG
AGCTGACAAGAAAATTTGAAGCACTTATGCAAAATGAACAATATAATTAT
TGGCACACTTGGGCATCGGAGAGAATGATATCAGGTAACACTAACATTCC
TTATTATGAAGTATTTAAAATGAAACATGTGGAGATGGCGATGTGGCCTT
TATGGTATGTAAGAGAAGAGTTTTGCGAAAGTGCACTTGACGGCAAAACA
AATCGTATTtcagcaaagaaaatgtttcatGCTAAGTGTATGTCCAGGAT
AATCGATTTTAGTCAAGACTATGAGCTACTGCAGTACCAATTCGATAGAT
GGTTGTACAAAACTGTTTGCGGTGCTGTTGAATCTGGGAAGAGATTCAGA
TGTACACCGAGACAATCTTTGGAAGGGAAATCATTCTGTTCCACCAAATG
GCAATACGACCACTTGTTCCTGATAGATGCTACAAGGCAGTACGGCTTTC
CTGATCTGTTTTTGACATTCTCAGTTGGCGAATGGAACTTTCCGAAATGC
AAATGGCTGGACACGCGAACAATGATGACATCAGATAACATCCAAAATTT
GCCGTACGATGTTACGGTACACATTCTTAA Coding sequence (CDS) from alignment at scaffold_387:8298..9127 >TCONS_00063380 ID=TCONS_00063380|Name=TCONS_00063380|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_387:8298..9127 (Clytia hemisphaerica)
AAAACAACGACCAATAAACGGATGTGCAATTGCAAATCGAAGTATCCCGT
CCCGAGAGACACGGATTACACGGACATCGGTGTATTCTCAAAAGAAGACC
AACGCAACCTGGCTGTTTTCAGTATAGACGTAGGCCCGTATACGCGCGCT
CATCACGGTTACCGAAAACGAGTCAAGCCGTTTCAACTTTACATCAAGCA
AGCGGTCCAAGATAAAATTGCTGCTGTGGACGACGAACAAAGACGTGAAG
AGCTGACAAGAAAATTTGAAGCACTTATGCAAAATGAACAATATAATTAT
TGGCACACTTGGGCATCGGAGAGAATGATATCAGGTAACACTAACATTCC
TTATTATGAAGTATTTAAAATGAAACATGTGGAGATGGCGATGTGGCCTT
TATGGTATGTAAGAGAAGAGTTTTGCGAAAGTGCACTTGACGGCAAAACA
AATCGTATTtcagcaaagaaaatgtttcatGCTAAGTGTATGTCCAGGAT
AATCGATTTTAGTCAAGACTATGAGCTACTGCAGTACCAATTCGATAGAT
GGTTGTACAAAACTGTTTGCGGTGCTGTTGAATCTGGGAAGAGATTCAGA
TGTACACCGAGACAATCTTTGGAAGGGAAATCATTCTGTTCCACCAAATG
GCAATACGACCACTTGTTCCTGATAGATGCTACAAGGCAGTACGGCTTTC
CTGATCTGTTTTTGACATTCTCAGTTGGCGAATGGAACTTTCCGAAATGC
AAATGGCTGGACACGCGAACAATGATGACATCAGATAACATCCAAAATTT
GCCGTACGATGTTACGGTACACATTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063380-exon-scaffold_387-1491911889:8298..9127 | TCONS_00063380-exon-scaffold_387-1491911889:8298..9127 | Clytia hemisphaerica | exon |
| TCONS_00063380-exon-scaffold_387-1510915933:8298..9127 | TCONS_00063380-exon-scaffold_387-1510915933:8298..9127 | Clytia hemisphaerica | exon |
| TCONS_00063380-exon-scaffold_387-1575043694:8298..9127 | TCONS_00063380-exon-scaffold_387-1575043694:8298..9127 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_387 | supercontig | scaffold_387:8298..9127 . |
Blast
The following BLAST results are available for this feature:
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