TCONS_00063379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063379
Unique NameTCONS_00063379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063379 ID=TCONS_00063379|Name=TCONS_00063379|organism=Clytia hemisphaerica|type=transcript|length=712bp
CACTCGAGCAATATTTGCTGTTTAGAAACTCTTTTGAAATGTCTTTTGAC
AGTTCTCTTAAATACATACCGTCTTCCAACAAAAATGACTCAAAAGATAT
GCTGGAAATGACGGGGGAGTTGGTCGTTTAAGTGGGCAAAATGGGGTACG
CTGAGGCTAAAACTGTAGAGGCGCTACTAAAGAAGAAAGGTTAGGTAGAA
GTGTACCTCGAGAGCACACATAGATCAATAAACAAGACCGGGGCACgaat
acaaaagaaattaaagaacAACAACTCAAAGAATCGTTATGCAATAAAAG
GGGCGTGGCATTGCTTTGCAACTGCAGAGGCAACAGTTGCAACACTACAG
aaTCCAATACCAGCTGTTCGACCAACAAaagattttgaagaattgggTCA
GCGACAAAAATACCGGCGTCTGACACAAGTTCGGGAAAGCGTGACAAGAA
CGGTGGAGAAGTTTGGCTTTACATCCGCTCAGATCAAATTGAAGACACCA
TCCGCAACCAAGATAACAGTTTCTTGCGAGAAAGGTAAAGCATAAACTAG
ACACTAGCACTACATTCCAAAATAGAAGTTCGGTACTGAAAAAATAGAGA
AATTGCAGTTTTGtcgtaaataaaaaatacatttagTTTGAAATAAATAC
AATTTATATTTAGGATCATCACTATGGTCGGAATCTTCCTCACAACAATC
GATAAGCCAATC
Run BLAST on NCBI

transcript from alignment at scaffold_387:95289..96455-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063379 ID=TCONS_00063379|Name=TCONS_00063379|organism=Clytia hemisphaerica|type=transcript|length=1167bp|location=Sequence derived from alignment at scaffold_387:95289..96455- (Clytia hemisphaerica)
CACTCGAGCAATATTTGCTGTTTAGAAACTCTTTTGAAATGTCTTTTGAC
AGTTCTCTTAAATACATACCGTCTTCCAACAAAAATGACTCAAAAGATAT
GCTGGAAATGACGGGGGAGTTGGTCGTTTAAGTGGGCAAAATGGGGTACG
CTGAGGCTAAAACTGTAGAGGCGCTACTAAAGAAGAAAGGTTAGGTAGAA
GTGTACCTCGAGAGCACACATAGATCAATAAACAAGACCGGGGCACGAAT
ACAAAAGAAATTAAAGAACAACAACTCAAAGAATCGTTATGCAATAAAAG
GGGCGTGGCATTGCTTTGCAACTGCAGAGGCAACAGTTGCAACACTACAG
GTAAGTTTCAGAAATCACGTGTTTCGTACCCACTTTTTTATAAGAACAGT
AAACCTTAGTAACGCGTAAACATTTTTTCTTATTTTCTACTATTTCAAAC
AACAGGCTTATTGTTAAAAACCCGCAAGCTCTCCCTAATATTCTTCTCAT
ACAGGTTATCTTACAGAAAACAAAGTTAGACAATTCCACTGATAAGAAAA
AAATCATTTAACTCCTGTGAGTCTCGTAGACTAAATGAATGCGAGAGAAA
GTGTAAAAAGTCTACATGATTTTTTTAGAATCCAATACCAGCTGTTCGAC
CAACAAAAGATTTTGAAGAATTGGGTCAGCGACAAAAATACCGGCGTCTG
ACACAAGTTCGGTAGTTGATATATAATCATATAGTGTTTTACAAATTTTC
TGCCCTGAAAAAAAAGCACTTACTCCATTCCATTACCATAATCAACACCC
TTTCCGTTTTCATGTTTGTACTAAATTTCGACGTCAAGACCTTCGCTGTG
AAAATAAGTAAAAAAAAATATTAGCAATTTTGATTTAGGGAAAGCGTGAC
AAGAACGGTGGAGAAGTTTGGCTTTACATCCGCTCAGATCAAATTGAAGA
CACCATCCGCAACCAAGATAACAGTTTCTTGCGAGAAAGGTAAAGCATAA
ACTAGACACTAGCACTACATTCCAAAATAGAAGTTCGGTACTGAAAAAAT
AGAGAAATTGCAGTTTTGTCGTAAATAAAAAATACATTTAGTTTGAAATA
AATACAATTTATATTTAGGATCATCACTATGGTCGGAATCTTCCTCACAA
CAATCGATAAGCCAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039713XLOC_039713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063379-exon-scaffold_387-1575043694:96106..96455TCONS_00063379-exon-scaffold_387-1575043694:96106..96455Clytia hemisphaericaexon
TCONS_00063379-exon-scaffold_387-1575043694:95745..95827TCONS_00063379-exon-scaffold_387-1575043694:95745..95827Clytia hemisphaericaexon
TCONS_00063379-exon-scaffold_387-1575043694:95289..95567TCONS_00063379-exon-scaffold_387-1575043694:95289..95567Clytia hemisphaericaexon
TCONS_00063379-exon-scaffold_387-1510915933:96106..96455TCONS_00063379-exon-scaffold_387-1510915933:96106..96455Clytia hemisphaericaexon
TCONS_00063379-exon-scaffold_387-1510915933:95745..95827TCONS_00063379-exon-scaffold_387-1510915933:95745..95827Clytia hemisphaericaexon
TCONS_00063379-exon-scaffold_387-1510915933:95289..95567TCONS_00063379-exon-scaffold_387-1510915933:95289..95567Clytia hemisphaericaexon
TCONS_00063379-exon-scaffold_387-1491911889:96106..96455TCONS_00063379-exon-scaffold_387-1491911889:96106..96455Clytia hemisphaericaexon
TCONS_00063379-exon-scaffold_387-1491911889:95745..95827TCONS_00063379-exon-scaffold_387-1491911889:95745..95827Clytia hemisphaericaexon
TCONS_00063379-exon-scaffold_387-1491911889:95289..95567TCONS_00063379-exon-scaffold_387-1491911889:95289..95567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_387supercontigscaffold_387:95289..96455 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.248639	0.160569	0	0	0	0.615808	0.460281	0.297475	0.23131	0	0	0	0.263703	0.928845	0	0.385458	0	0.397096	0	0.13459	0	0.895362	0.0116565	0	0.653325	0.564564	0	0.206431	0	0.239281
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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