TCONS_00063377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063377
Unique NameTCONS_00063377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063377 ID=TCONS_00063377|Name=TCONS_00063377|organism=Clytia hemisphaerica|type=transcript|length=551bp
TAATAATACAGCACTTTATTATTAATGCTGTGGTTATTGCATCATTATTC
ATATTCTGGTACACTTGCCACTGTCTTGTATCAAGATGGGCTGGTAAAAG
TTGCTGATgttaattttttcaactttctgaAGTCCACGCAACCAATAACA
TCATTTCCAGCAAATGATCTTGGGCACACAACAGGACTTAATGTTGTCCC
AAATAGCATGAAAGTCCCGTTGGATAAAATTTCAGAAGGCCTTACTGCTT
TTGCCTACTATGATGATGGCCTATACTATCCTGCCACTGTGAACAAACTC
AGCAATACAgttaaaagaagaaagaaagACGACGAACGCAGCACTACCAA
TGAtccaaataaagaaaataacagTTTGTGCATATTTTccttacaaccct
gtctcagtgGGATATATTATTTTAGGCAGGTTGTAGTAATTCACTATCAA
CTTCCCATAGGTTTCTATCCTAATTCAGTAACATAAAGCAATAAATACAA
ATGGCTAAACaaaggggttggaaattttctGAAGATCATAAtataataag
c
Run BLAST on NCBI

transcript from alignment at scaffold_387:19831..21506-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063377 ID=TCONS_00063377|Name=TCONS_00063377|organism=Clytia hemisphaerica|type=transcript|length=1676bp|location=Sequence derived from alignment at scaffold_387:19831..21506- (Clytia hemisphaerica)
TAATAATACAGCACTTTATTATTAATGCTGTGGTTATTGCATCATTATTC
ATGTGAGTGCTTGTGAGATACAAAAAGTAAGCTTTTCAAGACTTGAAATA
TAGTTATATGAAAAGTCATTTTATCACAATTAATATCTACTGTCAGGTTT
GCCTAATCCTGACCACCCCTATCTAACCCTGACCTCCCCCTCCTCTATAT
ATAATGCGGCAATCATAAATATCTTCATTTTTTTGCGTCCTCATTGGGTC
TAAAAAGTAAGTCGGTCGTTCGGTCGGTTGTAAAAATTTTCGGGTTTCAA
TTTTTCCATCCATTTTTGGAGTGGAGAGGAATCTGCCAGCAGCCAAAACA
ACCGCGACCCCAAAATGGCGCATGTAATGATAAACAAAGTCAAAATGCTG
CGAATTATATCTCTGTCTAATATCTAATTTCATAGATTCTGGTACACTTG
CCACTGTCTTGTATCAAGATGGGCTGGTAAAAGTTGCTGATGTTAATTTT
TTCAACTTTCTGAAGTCCACGCAACCAATAACATCATTTCCAGCAAATGA
TCTTGGGCACACAACAGGACTTAATGTAAGTGAATATTTTTTTTTACTGG
ATTTTTTAATTTTTTTAAATGGTTGTTGTTATGTTTCACATCACAACACA
ACATGAGGGTACCAGTATACACACCGAAAAGGGTCTCTATGATATAAATG
GTGCAGTCACCCAAACAGTATAAATTCCAGGACTCTAATAGATGATGATA
TTGTCTCTGTTTGATAAATCTAGTCAAGACATCTTTTACTTTCAGCTTAA
TGTTGGTGCTTTTTTTACAGCAGGACTTTTTGCAGCATTTAGCATTGGAA
GATTTTCAGATGTTAAGCTGCCATTCAAAAAGTCAATGCCCCTTTATAAT
TTCCCGTTTAGGTTGTCCCAAATAGCATGAAAGTCCCGTTGGATAAAATT
TCAGAAGGCCTTACTGCTTTTGCCTACTATGATGATGGCCTATACTATCC
TGCCACTGTGAACAAACTCAGCAATACAGTTAAAAGAAGAAAGAAAGGTA
TATATCAAATTAAATGTGTTAAATATACTTCAATATATCTAATAATATAT
ATATGGTTGTGGTGCTATGTATAAGTAAGAAATGTTGCTCTCATCACTGA
TAAACCCCATTCCTTAATTTTGAGGTAAAACATTACTTTTTTGTCAGCGT
TTTGCTTGCATATGGAACGTTGGATTTTCTTTTAAAGCGCAGGATCACTG
ATTCTGAAGTCGAGTGACCCTCTGGGTATCATACTCTCCATATTTCTTTC
AGAACTGTAGGAGACCTGCCTTTTAAAAACAAACACAAAGCAAATAGGAT
TTTTTAACCTCTAAAAGGCTTATTCACACATACACTTTTTGAAATACAGG
AGTGGTGATTGTATGCCTAGGCTACCAAGTTACCGACTTCATTTCTTTTT
CAGACGACGAACGCAGCACTACCAATGATCCAAATAAAGAAAATAACAGT
TTGTGCATATTTTCCTTACAACCCTGTCTCAGTGGGATATATTATTTTAG
GCAGGTTGTAGTAATTCACTATCAACTTCCCATAGGTTTCTATCCTAATT
CAGTAACATAAAGCAATAAATACAAATGGCTAAACAAAGGGGTTGGAAAT
TTTCTGAAGATCATAATATAATAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039712XLOC_039712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063377-exon-scaffold_387-1575043694:21455..21506TCONS_00063377-exon-scaffold_387-1575043694:21455..21506Clytia hemisphaericaexon
TCONS_00063377-exon-scaffold_387-1575043694:20932..21071TCONS_00063377-exon-scaffold_387-1575043694:20932..21071Clytia hemisphaericaexon
TCONS_00063377-exon-scaffold_387-1575043694:20460..20595TCONS_00063377-exon-scaffold_387-1575043694:20460..20595Clytia hemisphaericaexon
TCONS_00063377-exon-scaffold_387-1575043694:19831..20053TCONS_00063377-exon-scaffold_387-1575043694:19831..20053Clytia hemisphaericaexon
TCONS_00063377-exon-scaffold_387-1510915933:21455..21506TCONS_00063377-exon-scaffold_387-1510915933:21455..21506Clytia hemisphaericaexon
TCONS_00063377-exon-scaffold_387-1510915933:20932..21071TCONS_00063377-exon-scaffold_387-1510915933:20932..21071Clytia hemisphaericaexon
TCONS_00063377-exon-scaffold_387-1510915933:20460..20595TCONS_00063377-exon-scaffold_387-1510915933:20460..20595Clytia hemisphaericaexon
TCONS_00063377-exon-scaffold_387-1510915933:19831..20053TCONS_00063377-exon-scaffold_387-1510915933:19831..20053Clytia hemisphaericaexon
TCONS_00063377-exon-scaffold_387-1491911889:21455..21506TCONS_00063377-exon-scaffold_387-1491911889:21455..21506Clytia hemisphaericaexon
TCONS_00063377-exon-scaffold_387-1491911889:20932..21071TCONS_00063377-exon-scaffold_387-1491911889:20932..21071Clytia hemisphaericaexon
TCONS_00063377-exon-scaffold_387-1491911889:20460..20595TCONS_00063377-exon-scaffold_387-1491911889:20460..20595Clytia hemisphaericaexon
TCONS_00063377-exon-scaffold_387-1491911889:19831..20053TCONS_00063377-exon-scaffold_387-1491911889:19831..20053Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_387supercontigscaffold_387:19831..21506 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0696388	0.110546	0	0	0	0	0	0.103175	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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