TCONS_00063370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063370
Unique NameTCONS_00063370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063370 ID=TCONS_00063370|Name=TCONS_00063370|organism=Clytia hemisphaerica|type=transcript|length=437bp
aatttcaaaggaaatgaCGGTGACGGaaatttggttcaatttaagacggt
ttgacggaaattggggAAATAAttgacggaattgcggaatcgggtacccc
ctgaaaccccccccacTCGACTTCGAAGAAACTGAGAAACGGACAACTCC
AGGTGTCAGGGAGGGATAAAATGCTCTCGGAAAGGCGGAGAGGGGGGAGG
CGGTTTTTCccagttttttctttacgtGAAAGGGGCGCCGTAATGATTAT
TTCGTCTATGGCACCTCGTCTAATAATCACTGTGGGTGCCATTTCATGTT
TTCGAATTTTCAATGTGGGTCAAGATCATCTCTTCAAAATGGAGGGCATG
GAGTCAGAAATTTCTAGATAAATTCTTCTTTTACATAAATTTGCTGTGGA
TCAAAAATGTGATTTGGCTCAATATGTAAGATATATC
Run BLAST on NCBI

transcript from alignment at scaffold_386:110596..111032

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063370 ID=TCONS_00063370|Name=TCONS_00063370|organism=Clytia hemisphaerica|type=transcript|length=437bp|location=Sequence derived from alignment at scaffold_386:110596..111032 (Clytia hemisphaerica)
GATATATCTTACATATTGAGCCAAATCACATTTTTGATCCACAGCAAATT
TATGTAAAAGAAGAATTTATCTAGAAATTTCTGACTCCATGCCCTCCATT
TTGAAGAGATGATCTTGACCCACATTGAAAATTCGAAAACATGAAATGGC
ACCCACAGTGATTATTAGACGAGGTGCCATAGACGAAATAATCATTACGG
CGCCCCTTTCacgtaaagaaaaaactggGAAAAACCGCCTCCCCCCTCTC
CGCCTTTCCGAGAGCATTTTATCCCTCCCTGACACCTGGAGTTGTCCGTT
TCTCAGTTTCTTCGAAGTCGAgtggggggggtttcagggggtacccgatt
ccgcaattccgtcaaTTATTTccccaatttccgtcaaaccgtcttaaatt
gaaccaaatttCCGTCACCGtcatttcctttgaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039709XLOC_039709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063370-exon-scaffold_386-1491911889:110596..111032TCONS_00063370-exon-scaffold_386-1491911889:110596..111032Clytia hemisphaericaexon
TCONS_00063370-exon-scaffold_386-1510915933:110596..111032TCONS_00063370-exon-scaffold_386-1510915933:110596..111032Clytia hemisphaericaexon
TCONS_00063370-exon-scaffold_386-1575043694:110596..111032TCONS_00063370-exon-scaffold_386-1575043694:110596..111032Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_386supercontigscaffold_386:110596..111032 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.67873	1.65819	1.00027	0.374576	0.262477	0.162419	0	0	0	0	0.0883572	0.0948208	0	0	0	0.346181	0	0.238762	0	0	0.334131	0.153105	0.23804	0	0.348872	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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