TCONS_00063367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063367
Unique NameTCONS_00063367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063367 ID=TCONS_00063367|Name=TCONS_00063367|organism=Clytia hemisphaerica|type=transcript|length=439bp
GNGTTTGCTCTTCAAAGAATATGGTTGAAACCAAGATATTCAAAGCCAAA
AGATATTGATTTTCTACAGAAGTTATCAAAATTCCCAATTAGAGAGTTAC
GTACTCgagattttgaatgttcttgGATGGAGATTCTTTATTTGGTACCA
CAGCTCAAACTTTTAAACATCGAATTACCCATGGATAAATACAGGGAAGC
TGAAATTCCATTGCAATCAcgtcttcgatttttgagactaCCTGTTATAG
TTCATACAAGTGCATTCGAATTGACTGAGCAGGACCACTTTGATCAATTG
TTGAAAATTGTTGAAACAATCAATGTTAAAGAAATGGTTATAGACAGCCC
TAGTTACAACNTCAAGCTTCATGGATAATCAGGAGAGAAGTATACGACGT
TTCGGGGCCTAACTCTCTACGCTTGTTTCCGCACACCGG
Run BLAST on NCBI

protein sequence of TCONS_00063367-protein

>TCONS_00063367-protein ID=TCONS_00063367-protein|Name=TCONS_00063367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
XFALQRIWLKPRYSKPKDIDFLQKLSKFPIRELRTRDFECSWMEILYLVP
QLKLLNIELPMDKYREAEIPLQSRLRFLRLPVIVHTSAFELTEQDHFDQL
LKIVETINVKEMVIDSPSYNXKLHG
Run BLAST on NCBI

transcript from alignment at scaffold_386:22115..22553

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063367 ID=TCONS_00063367|Name=TCONS_00063367|organism=Clytia hemisphaerica|type=transcript|length=439bp|location=Sequence derived from alignment at scaffold_386:22115..22553 (Clytia hemisphaerica)
CCGGTGTGCGGAAACAAGCGTAGAGAGTTAGGCCCCGAAACGTCGTATAC
TTCTCTCCTGATTATCCATGAAGCTTGANGTTGTAACTAGGGCTGTCTAT
AACCATTTCTTTAACATTGATTGTTTCAACAATTTTCAACAATTGATCAA
AGTGGTCCTGCTCAGTCAATTCGAATGCACTTGTATGAACTATAACAGGt
agtctcaaaaatcgaagacgTGATTGCAATGGAATTTCAGCTTCCCTGTA
TTTATCCATGGGTAATTCGATGTTTAAAAGTTTGAGCTGTGGTACCAAAT
AAAGAATCTCCATCcaagaacattcaaaatctcGAGTACGTAACTCTCTA
ATTGGGAATTTTGATAACTTCTGTAGAAAATCAATATCTTTTGGCTTTGA
ATATCTTGGTTTCAACCATATTCTTTGAAGAGCAAACNC

Coding sequence (CDS) from alignment at scaffold_386:22115..22553

>TCONS_00063367 ID=TCONS_00063367|Name=TCONS_00063367|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_386:22115..22553 (Clytia hemisphaerica)
TTATCCATGAAGCTTGANGTTGTAACTAGGGCTGTCTATAACCATTTCTT
TAACATTGATTGTTTCAACAATTTTCAACAATTGATCAAAGTGGTCCTGC
TCAGTCAATTCGAATGCACTTGTATGAACTATAACAGGtagtctcaaaaa
tcgaagacgTGATTGCAATGGAATTTCAGCTTCCCTGTATTTATCCATGG
GTAATTCGATGTTTAAAAGTTTGAGCTGTGGTACCAAATAAAGAATCTCC
ATCcaagaacattcaaaatctcGAGTACGTAACTCTCTAATTGGGAATTT
TGATAACTTCTGTAGAAAATCAATATCTTTTGGCTTTGAATATCTTGGTT
TCAACCATATTCTTTGAAGAGCAAACNC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039706XLOC_039706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063367-exon-scaffold_386-1491911889:22115..22553TCONS_00063367-exon-scaffold_386-1491911889:22115..22553Clytia hemisphaericaexon
TCONS_00063367-exon-scaffold_386-1510915933:22115..22553TCONS_00063367-exon-scaffold_386-1510915933:22115..22553Clytia hemisphaericaexon
TCONS_00063367-exon-scaffold_386-1575043694:22115..22553TCONS_00063367-exon-scaffold_386-1575043694:22115..22553Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063367-proteinTCONS_00063367-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_386supercontigscaffold_386:22115..22553 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.87207	10.5293	4.19162	3.2465	0.832065	1.80815	1.98314	1.48527	1.16986	1.28805	0.937662	1.43822	2.25693	1.27846	1.40142	1.50394	1.15796	2.01768	2.62356	2.23061	4.17588	1.9641	18.9242	18.0088	1.15929	1.62586	2.53811	2.70873	7.7043	9.59379
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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