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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063355 ID=TCONS_00063355|Name=TCONS_00063355|organism=Clytia hemisphaerica|type=transcript|length=1984bpRun BLAST on NCBI protein sequence of TCONS_00063355-protein >TCONS_00063355-protein ID=TCONS_00063355-protein|Name=TCONS_00063355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp MILSLAVRSIWRANTFVPLRCCCHGSQRVAKYSSVQSSPRVGIVGSGPAGRun BLAST on NCBI transcript from alignment at scaffold_386:80103..103031- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063355 ID=TCONS_00063355|Name=TCONS_00063355|organism=Clytia hemisphaerica|type=transcript|length=22929bp|location=Sequence derived from alignment at scaffold_386:80103..103031- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_386:80103..103031- >TCONS_00063355 ID=TCONS_00063355|Name=TCONS_00063355|organism=Clytia hemisphaerica|type=CDS|length=21168bp|location=Sequence derived from alignment at scaffold_386:80103..103031- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063355 vs. Swiss-Prot (Human)
Match: ADRO (NADPH:::adrenodoxin oxidoreductase, mitochondrial OS=Homo sapiens GN=FDXR PE=1 SV=3) HSP 1 Score: 483.026 bits (1242), Expect = 1.361e-163 Identity = 245/478 (51.26%), Postives = 328/478 (68.62%), Query Frame = 1
Query: 145 CHGSQRVAKYSSVQSSPRVGIVGSGPAGFYTAQYILKHHPTAQVDIFEKLPVPFGLVRYGVAPDHPEVKNATNTFEEVAQNERFRFFGNVNIGQDLKAVDLQSAYNAVVFAYGADDDKRLHIEGEDGKGVIAARSFVGWYNGLPAHAELSPNLDCETAVVVGHGNVALDVARILLAPLALLEHTDICHHAIEALQNSRVKRVILLGRRGPLEVSFTIKELREMIRLDGTKPVLRAEDFVDIRPKVPEIVRQRRRLIDLMCKTALDEPSPKDSARFDAALKEWHLEFLSSPQEILLD-DSNNVKGIRIQKNELIEDEDGSTVAKATDQTVDIECGMVLRSIGYKSIPLQEGVPFDNKMGVIPNINGRVVQQAGSKELVKGLYCSGWVKHGPVGVIVTTMNEAFATAETIVKDLNAGAV--NQETNISDVGELLRGRGVNFVSYEDYQKIDMEEIWRGKQSSKPREKIVDTSEMLDFASH 1569
CH +S+ + +P++ +VGSGPAGFYTAQ++LKH P A VDI+EK PVPFGLVR+GVAPDHPEVKN NTF + A + R F+GNV +G+D+ +L+ AY+AVV +YGA+D + L I GE+ GV +AR+FVGWYNGLP + EL P+L C+TAV++G GNVALDVARILL P LE TDI A+ L+ SRVK V L+GRRGPL+V+FTIKELREMI+L G +P+L DF+ ++ K+ E+ R R+RL +L+ +TA ++P P ++AR +A + W L F SPQ++L D G+R+ L E D +T A T D+ CG+VL SIGYKS P+ VPFD+K+GVIPN+ GRV+ V GLYCSGWVK GP GVI TTM ++F T + +++DL AG + + + LL RGV VS+ D++K+D EE+ RG+ + KPREK+VD EML H
Sbjct: 29 CH------HFSTQEKTPQICVVGSGPAGFYTAQHLLKH-PQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFVGWYNGLPENQELEPDLSCDTAVILGQGNVALDVARILLTPPEHLERTDITKAALGVLRQSRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKEVPRPRKRLTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPDGRRAAGVRLAVTRL-EGVDEATRAVPTGDMEDLPCGLVLSSIGYKSRPVDPSVPFDSKLGVIPNVEGRVMD-------VPGLYCSGWVKRGPTGVIATTMTDSFLTGQMLLQDLKAGLLPSGPRPGYAAIQALLSSRGVRPVSFSDWEKLDAEEVARGQGTGKPREKLVDPQEMLRLLGH 491 The following BLAST results are available for this feature:
BLAST of TCONS_00063355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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