TCONS_00063351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063351
Unique NameTCONS_00063351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063351 ID=TCONS_00063351|Name=TCONS_00063351|organism=Clytia hemisphaerica|type=transcript|length=477bp
TTGGAAGATTCGACCATTCCAAAAATCATCATTTTACTTTGTCATATCAT
CTATATACCTAATCAGTATATAATTATAAGAGAGTATAGAGAGAGGCTTC
AATATGCAtagagaatttttgaaaaaacattagCATAAAATGTATTTACA
ACCCTGAAAATTCATTCATTACCTGCATTAGGGTCTACACCAGCCAAAag
agtttgtttatatttgacaAGTGATTCATCATCAGCATCTAAGTTTTGGA
TTTCATTGAGTGATTTCTGTGCTGGTGCTTTGTATCCGGGAGTTTCTTCT
GGCTCTTCGTTAGCAATAGGGACAGGATCCTGTTCAGCCATTTTTgtgta
tatatttttgtttcttgtttgaAAATTGGATGGAAAATTTAGATAAAAGA
AACCTATTGATAGACACAACTCCCAAGAATCTACAACAAATATCAAATAT
TCTTACACCTTCAGATTTAGACTCTAA
Run BLAST on NCBI

transcript from alignment at scaffold_386:115999..116527+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063351 ID=TCONS_00063351|Name=TCONS_00063351|organism=Clytia hemisphaerica|type=transcript|length=529bp|location=Sequence derived from alignment at scaffold_386:115999..116527+ (Clytia hemisphaerica)
TTGGAAGATTCGACCATTCCAAAAATCATCATTTTACTTTGTCATATCAT
CTATATACCTAATCAGTATATAATTATAAGAGAGTATAGAGAGAGGCTTC
AATATGCAtagagaatttttgaaaaaacattagCATAAAATGTATTTACA
ACCCTGAAAATTCATTCATTACCTGCATTAGGGTCTACACCAGCCAAAag
agtttgtttatatttgacaAGTGATTCATCATCAGCATCTAAGTTTTGGA
TTTCATTGAGTGATTTCTGTGCTGGTGCTTTGTATCCGGGAGTTTCTTCT
GGCTCTTCGTTAGCAATAGGGACAGGTTCCTGTTCAGCCATTTTTGTGTA
TATNCTCTTCGTTAGCAATAGGGACAGGATCCTGTTCAGCCATTTTTgtg
tatatatttttgtttcttgtttgaAAATTGGATGGAAAATTTAGATAAAA
GAAACCTATTGATAGACACAACTCCCAAGAATCTACAACAAATATCAAAT
ATTCTTACACCTTCAGATTTAGACTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039698XLOC_039698Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063351-exon-scaffold_386-1491911889:115999..116323TCONS_00063351-exon-scaffold_386-1491911889:115999..116323Clytia hemisphaericaexon
TCONS_00063351-exon-scaffold_386-1510915933:115999..116323TCONS_00063351-exon-scaffold_386-1510915933:115999..116323Clytia hemisphaericaexon
TCONS_00063351-exon-scaffold_386-1575043694:115999..116323TCONS_00063351-exon-scaffold_386-1575043694:115999..116323Clytia hemisphaericaexon
TCONS_00063351-exon-scaffold_386-1491911889:116376..116527TCONS_00063351-exon-scaffold_386-1491911889:116376..116527Clytia hemisphaericaexon
TCONS_00063351-exon-scaffold_386-1510915933:116376..116527TCONS_00063351-exon-scaffold_386-1510915933:116376..116527Clytia hemisphaericaexon
TCONS_00063351-exon-scaffold_386-1575043694:116376..116527TCONS_00063351-exon-scaffold_386-1575043694:116376..116527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_386supercontigscaffold_386:115999..116527 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.9275	18.755	25.0521	25.5899	3.15112	6.35612	5.33421	6.49112	118.713	113.857	99.2083	103.539	102.522	93.9245	41.108	77.0565	67.3869	59.7518	49.4188	45.3332	19.599	6.80843	10.4864	22.1037	8.01657	6.66833	18.2575	9.26625	7.82788	21.0936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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