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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063350 ID=TCONS_00063350|Name=TCONS_00063350|organism=Clytia hemisphaerica|type=transcript|length=3551bp
ATTAGAGAGACTAGCAGagtaaagaaacaaaaaatggccGGTATcgctta
taaagaaaatttagCTAATATTACTGCTAATGTATTGGCTTTGAAAGCAC
AACCAATCGATCCGACCAAATGTACTCCAAACAAATCATTGTATCCGCAG
ATTCTCAATAACAGTCAAGCCACGTCAGAAAGACAAGCAAAACAGTTCAA
TCTGGGCAACACACATTGTACAGCGAATCCAATCGTTGCAGCCGACTTCA
TTCTCGAAAGGGAATATGGTGATAGTTCACTTTTCGTTCAAAATGAACAT
ACAAGCGTTTTTATACcaccaatatttgtttcaaACCAATACAAACAATC
TTCGGCTGCTTTACTAGAATATAACATTGACAAAGATATTGAAAGGCTTT
TGGTTAATTTGAAACAACATTCACCAACGTATTGGCTGACAAAGGAGTTG
GAAAGTTTTATTATTACGCAAAATGGTGCTGATTGTATTGATAAGAAGGC
TTTTGACCGATGGATCTTAAACCTTCAAATTATGTATGTGGTTATTCTAG
AACTGAAAACTGACCAAGTAAACCTACCATCAACAACATCGGAGTTGGGA
ATTTTTCTCAACTGTAGTATCgcagcccagctggcacacaacgttgttta
aacgttcatctaacgttatatggacgttgtgaacgttaaataaacgttga
aacaacgttttgtgccagctggcAGTGCTACCTTTTCCGTCGCCTTTGAA
AACACTTCTCCAGCAAAATTGTTTGGTCAATAACCTCAGGAAACAAGTTC
AGCAAATGATTGAGGATAAGCCGAGCCAAGATTCAAACATCCAATGGCTT
TTCAGATTGGAATTATCTAAAATTGGTGAAAAACTTGAACATTGGTTTTA
TGACCAACTTTTACCATTAAAAGATGACATTCTCCAGGATACAGTTGTTC
TTTCATCGCTTACATTCTTGACAAACTTGAGAAAGAAAATGCATAAAGAA
ACTGATTTCATAATCATCGCTTGGCAAAGGAAACTCGTTATCTCCGTTGA
GCTGAAAAGGACAATAGTCGATGAGAAAGTCTTTAAGCAGTTGAAATCGA
GTCATCAAATCTTTGAGGAGAGACTAGGAGACCAATTAAAATCTGGTTGG
ACATATTTTCCGGTTGTCGGCGTTGAAAATGACAACTTCACAGTCAACAG
CCAGCATTTTATCACCATGAAAACTGAAATCAAACCCTGGTTGACCAGTA
TCTTAAACAAATTCCAGACAGTCCAGACAACGCACATACCAAGTCCTTTG
GAGGAAACTAAAGATCTCCTGAAAATGCTAATCTTTGCCATTCACGTTTC
GAAAAAAGATCAACCTCCAATTACAAGCTCAACTTGGGTTGAATACACCA
GCAACGCTATCGAAAATGTGTCAACCAGCCACAACATTTTGTTCCACTCC
AACCAACAGATGGCAATAATGAACAACGATGATCTACGCTACAAGAAAGT
GATGATTCATGGGCCATTTGGTGGGGGTAAAAGTATCTTACTTACCCAGA
AGGCCATGCAATTGAACAAACAAACTGAATATGATGGAAAGGTTATGTAT
GTTGTTAGTGGTGTCGAATCTATGAGAGggTTCTAAAGCGTTCACTCAGC
TCATTGAAAAGATCAAATTACGTGATATCAAAGCAGTATTTGTTGATGAA
TGTGACGTCTGGTTACGAATTACCAAGAAACGCATAGAGCAGGTTATGCC
ACTCGTTGACTACTTATGGATCGTCCCATCAACTGAGTCTTTAAAGAAAG
GAAATCACGAAAAATGGTGGACAAAGTTTTCCGTAGTTAATCTCAAACAG
AATTTCAGGAATTCTCAACAAATTGCAAAAGCTACTAAATCAGTAGCGGA
GAAGAACAATTATGCATACAAAGAAGGTATCGCAATTCCACTTGGTAATT
TCCCAGCTGGTTGTGAACCTATTTTTGTGGATCTGTTTGAGGAAGCAGTG
AAAGAAGCAAGGAAGCGAACAAACGAAGGTATCCTTGTGATAATTCCAAA
TCATTATGACATTGTAGAAGACTATTGTACGCTTTTGAATCAAGAGAACG
AATACTGTAAAGCATACCATCTACATAAAAATGAATTTGGACCAGGAGAA
AATCCATATGTGTTTCTTCAGGAAGGCAACGTGTTACGGTGTACCACAAA
CCTTATCGTTGTAAGGAAGAAATGAAGTATTTGTTGAAGGGGTGGAGAAA
CCACTAGCTAGAAGCTACTATATAAGaaatatgtttcttttctttaaatt
tgATGTATAATAATAgtacaatgggcttttccagaaaaaaaccgtatacc
ccctgttgaggaggtccatcattttgtggcttgaaatgctgtaaccccct
ggaattccaggcaatttcaggtttaaacccctctggaattctgaatttag
taggatttaaaaggctacccccatggaattccagttatttttgacagttt
tttgtacagggggtatacggtttttttctggaaaagcccaatgtgtACTT
AGCTCAAGGCTAATCAATATGAAATTGTATTTGTTAGAGGGTGGAGAAAC
CACTACTATACTATTAAAACTGTCAcgcatgaaattttgaaatatttaga
tTATGATTATATTCTTCCTAAGCTTGTAAAGCAGAGAAAAGAAATAAACC
TTGAATACTTTTGGTCTCGTGCCAATGGCCTCTTAGGATGTAAGACCGTT
TTGTGAAATCAAATcaacccagccggcacacaacgtcgtttcaacgtttt
tccgatgttcacaatgtccatataacgttagatgaacgttgaaacaacgt
tgtgtgccagctgggcaaaGTAGATACTAGAGTCACTGTTCTTTATGCAG
TTTGCCGATCATTTTTATATTAATTAGCGATCTTTGtaatattctttctt
ttttaattatgGAGGTAGGAGATATTTAGCTACTATGAACCAAATCTCCT
GGTGACAAAAGAGATTTAATCCTCCAAACCCTAGTgaaaagtgaaaagtc
aaaATTAACCCATGTACCGAGTCCCGTACTTAAAGCgctaactcctgacc
acttgattttaAAGGGTATAAACAGAATGCTTTTTAAATAGTTAATGAAA
TACCTTtctaatgggctcttccagaaaaaatccgttcatggggggtggag
gatgaattgtccaggggtattgaaaaaataccaaaaaatcgcaatgtcca
gggggtaaattccaatgtccagggataattttttgtgtccacggggttga
tttgatgtttgtccaggggtatagcCCGTGTCTAGGggattaaaaatcaa
aatgtccaggggtaattcatgaaaaaaataatatatcctccaccccccat
gaacggattttttctggaagagcccattcttgGAAAGCACTGTCGCTCGA
ATTTCGCGTTTTTATGACTCTTCGTTTCTTGAAATTCCTTGAAATATTTA
AATTGCTTACTATACTTTCTATCGCCATGTTGTAACTGGAAATATTTACG
N Run BLAST on NCBI transcript from alignment at scaffold_386:69891..74275+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063350 ID=TCONS_00063350|Name=TCONS_00063350|organism=Clytia hemisphaerica|type=transcript|length=4385bp|location=Sequence derived from alignment at scaffold_386:69891..74275+ (Clytia hemisphaerica)
ATTAGAGAGACTAGCAGagtaaagaaacaaaaaatggccGGTATcgctta
taaagaaaatttagCTAATATTACTGCTAATGTATTGGCTTTGAAAGCAC
AACCAATCGATCCGACCAAATGTACTCCAAACAAATCATTGTATCCGCAG
ATTCTCAATAACAGTCAAGCCACGTCAGAAAGACAAGCAAAACAGTTCAA
TCTGGGCAACACACATTGTACAGCGAATCCAATCGTTGCAGCCGACTTCA
TTCTCGAAAGGGAATATGGTGATAGTTCACTTTTCGTTCAAAATGAACAT
ACAAGCGTTTTTATACCTCCATTTGTTTCAAACCAATACAAACAATCTTC
AGCTGNCATACAAGCGTTTTTATACcaccaatatttgtttcaaACCAATA
CAAACAATCTTCGGCTGCTTTACTAGAATATAACATTGACAAAGATATTG
AAAGGCTTTTGGTTAATTTGAAACAACATTCACCAACGTATTGGCTGACA
AAGGAGTTGGAAAGTTTTATTATTACGCAAAATGGTGCTGATTGTATTGA
TAAGAAGGCTTTTGACCGATGGATCTTAAACCTTCAAATTATGTATGTGG
TTATTCTAGAACTGAAAACTGACCAAGTAAACCTACCATCAACAACATCG
GAGTTGGGAATTTTTCTCAACTGTAGTATCgcagcccagctggcacacaa
cgttgtttaaacgttcatctaacgttatatggacgttgtgaacgttaaat
aaacgttgaaacaacgttttgtgccagctggcAGTGCTACCTTTTCCGTC
GCCTTTGAAAACACTTCTCCAGCAAAATTGTTTGGTCAATAACCTCAGGA
AACAAGTTCAGCAAATGATTGAGGATAAGCCGAGCCAAGATTCAAACATC
CAATGGCTTTTCAGATTGGAATTATCTAAAATTGGTGAAAAACTTGAACA
TTGGTTTTATGACCAACTTTTACCATTAAAAGATGACATTCTCCAGGATA
CAGTTGTTCTTTCATCGCTTACATTCTTGACAAACTTGAGAAAGAAAATG
CATAAAGAAACTGATTTCATAATCATCGCTTGGCAAAGGAAACTCGTTAT
CTCCGTTGAGCTGAAAAGGACAATAGTCGATGAGAAAGTCTTTAAGCAGT
TGAAATCGAGTCATCAAATCTTTGAGGAGAGACTAGGAGACCAATTAAAA
TCTGGTTGGACATATTTTCCGGTTGTCGGCGTTGAAAATGACAACTTCAC
AGTCAACAGCCAGCATTTTATCACCATGAAAACTGAAATCAAACCCTGGT
TGACCAGTATCTTAAACAAATTCCAGACAGTCCAGACAACGCACATACCA
AGTCCTTTGGAGGAAACTAAAGATCTCCTGAAAATGCTAATCTTTGCCAT
TCACGTTTCGAAAAAAGATCAACCTCCAATTACAAGCTCAACTTGGGTTG
AATACACCAGCAACGCTATCGAAAATGTGTCAACCAGCCACAACATTTTG
TTCCACTCCAACCAACAGATGGCAATAATGAACAACGATGATCTACGCTA
CAAGAAAGTGATGATTCATGGGCCATTTGGTGGGGGTAAAAGTATCTTAC
TTACCCAGAAGGCCATGCAATTGAACAAACAAACTGAATATGATGGAAAG
GTTATGTATGTTGTTAGTGGTGTCGAATCTATGAGAGGTGAAACAAAGTA
CCTTCTATTCCATCGATTGAAGGTTGATCTCGAAGAAAATCTTGGAATAT
TTGTCGAAGATTATGATTTCCGGGTGAGTGATTTattaaatacaaaaata
atacacgtttttttaaataagaacaagcTANTCGGATGAGTGATTTATCA
AATACAAaattaatacacgtttttttaataagaacaaactatataagaac
ataaggcttcgacggttaaaatgttaagaacaagttaagaacattttaag
gctttatggactcaaaatcacccgatttcttaggaaaatgggtaaaaatg
gtgaaaaaatggtgaaaataagaacatgttaagaacatttttaggcttaa
aactgaaaaagttatttttggatgttctaaaaaaaaacgtgtagacctAA
GATCTTCTATAGCGGTCACAACGCCTTTCAGTATCTTAACAAGTGTAGTA
CCTATAGATTTATTCAACGACCACTTTTGTCTATTACTCCAACATAAAAT
AAACAAGGCCTTTCTTGCGTCGGTCCTTGTTGGCGTTATTCACGGCTATA
ATCGGCGTAAGCTTAACATTTGTCAGTGACGGATTACAAGAGACGGCGTA
AAAGGGTCTAGTCGGCGTTAATTAAGGGCCGATGAAGAGGTGATAAGGAA
GTAAAATTAATCAAAGGCTCTTTTAAAAATTGCCTTTTATTAATTGNTGG
AAGTCAAATtaattgccttttttaattaCCATTGACAGCAgcccattttt
tttattttatagggTTCTAAAGCGTTCACTCAGCTCATTGAAAAGATCAA
ATTACGTGATATCAAAGCAGTATTTGTTGATGAATGTGACGTCTGGTTAC
GAATTACCAAGAAACGCATAGAGCAGGTTATGCCACTCGTTGACTACTTA
TGGATCGTCCCATCAACTGAGTCTTTAAAGAAAGGAAATCACGAAAAATG
GTGGACAAAGTTTTCCGTAGTTAATCTCAAACAGAATTTCAGGAATTCTC
AACAAATTGCAAAAGCTACTAAATCAGTAGCGGAGAAGAACAATTATGCA
TACAAAGAAGGTATCGCAATTCCACTTGGTAATTTCCCAGCTGGTTGTGA
ACCTATTTTTGTGGATCTGTTTGAGGAAGCAGTGAAAGAAGCAAGGAAGC
GAACAAACGAAGGTATCCTTGTGATAATTCCAAATCATTATGACATTGTA
GAAGACTATTGTACGCTTTTGAATCAAGAGAACGAATACTGTAAAGCATA
CCATCTACATAAAAATGAATTTGGACCAGGAGAAAATCCATATGTGTTTC
TTCAGGAAGGCAACGTGTTACGGTGTACCACAAACCTTATCGTTGTAAGG
AAGAAATGAAGTATTTGTTGAAGGGGTGGAGAAACCACTAGCTAGAAGCT
ACTATATAAGaaatatgtttcttttctttaaatttgATGTATAATAATAg
tacaatgggcttttccagaaaaaaaccgtataccccctgttgaggaggtc
catcattttgtggcttgaaatgctgtaaccccctggaattccaggcaatt
tcaggtttaaacccctctggaattctgaatttagtaggatttaaaaggct
acccccatggaattccagttatttttgacagttttttgtacagggggtat
acggtttttttctggaaaagcccaatgtgtACTTAGCTCAAGGCTAATCA
ATATGAAATTGTATTTGTTAGAGGGTGGAGAAACCACTACTATACTATTA
AAACTGTCAcgcatgaaattttgaaatatttagatTATGATTATATTCTT
CCTAAGCTTGTAAAGCAGAGAAAAGAAATAAACCTTGAATACTTTTGGTC
TCGTGCCAATGGCCTCTTAGGATGTAAGACCGTTTTGTGAAATCAAATca
acccagccggcacacaacgtcgtttcaacgtttttccgatgttcacaatg
tccatataacgttagatgaacgttgaaacaacgttgtgtgccagctgggc
aaaGTAGATACTAGAGTCACTGTTCTTTATGCAGTTTGCCGATCATTTTT
ATATTAATTAGCGATCTTTGtaatattctttcttttttaattatgGAGGT
AGGAGATATTTAGCTACTATGAACCAAATCTCCTGGTGACAAAAGAGATT
TAATCCTCCAAACCCTAGTgaaaagtgaaaagtcaaaATTAACCCATGTA
CCGAGTCCCGTACTTAAAGCgctaactcctgaccacttgattttaAAGGG
TATAAACAGAATGCTTTTTAAATAGTTAATGAAATACCTTtctaatgggc
tcttccagaaaaaatccgttcatggggggtggaggatgaattgtccaggg
gtattgaaaaaataccaaaaaatcgcaatgtccagggggtaaattccaat
gtccagggataattttttgtgtccacggggttgatttgatgtttgtccag
gggtatagcCCGTGTCTAGGggattaaaaatcaaaatgtccaggggtaat
tcatgaaaaaaataatatatcctccaccccccatgaacggattttttctg
gaagagcccattcttgGAAAGCACTGTCGCTCGAATTTCGCGTTTTTATG
ACTCTTCGTTTCTTGAAATTCCTTGAAATATTTAAATTGCTTACTATACT
TTCTATCGCCATGTTGTAACTGGAAATATTTACGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063350-exon-scaffold_386-1491911889:69891..70188 | TCONS_00063350-exon-scaffold_386-1491911889:69891..70188 | Clytia hemisphaerica | exon |
| TCONS_00063350-exon-scaffold_386-1510915933:69891..70188 | TCONS_00063350-exon-scaffold_386-1510915933:69891..70188 | Clytia hemisphaerica | exon |
| TCONS_00063350-exon-scaffold_386-1575043694:69891..70188 | TCONS_00063350-exon-scaffold_386-1575043694:69891..70188 | Clytia hemisphaerica | exon |
| TCONS_00063350-exon-scaffold_386-1491911889:70248..71577 | TCONS_00063350-exon-scaffold_386-1491911889:70248..71577 | Clytia hemisphaerica | exon |
| TCONS_00063350-exon-scaffold_386-1510915933:70248..71577 | TCONS_00063350-exon-scaffold_386-1510915933:70248..71577 | Clytia hemisphaerica | exon |
| TCONS_00063350-exon-scaffold_386-1575043694:70248..71577 | TCONS_00063350-exon-scaffold_386-1575043694:70248..71577 | Clytia hemisphaerica | exon |
| TCONS_00063350-exon-scaffold_386-1491911889:72353..74275 | TCONS_00063350-exon-scaffold_386-1491911889:72353..74275 | Clytia hemisphaerica | exon |
| TCONS_00063350-exon-scaffold_386-1510915933:72353..74275 | TCONS_00063350-exon-scaffold_386-1510915933:72353..74275 | Clytia hemisphaerica | exon |
| TCONS_00063350-exon-scaffold_386-1575043694:72353..74275 | TCONS_00063350-exon-scaffold_386-1575043694:72353..74275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_386 | supercontig | scaffold_386:69891..74275 + |
Blast
The following BLAST results are available for this feature:
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