TCONS_00063344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063344
Unique NameTCONS_00063344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063344 ID=TCONS_00063344|Name=TCONS_00063344|organism=Clytia hemisphaerica|type=transcript|length=243bp
ATTGGTTTATGTCTCTGAGGGTGGCATATCATGTCTAAGAGTACGGCAGT
ATCGTGGTCACTAAAACCTGGGACTGGTGAGCAATTTGAGACAAAGCCTG
GTCGGTTTGTGAGCATAAGGTCAAGTATTGCTTTCTTCCGTGTTGTAAAA
TTGACCATTTGATGAAGACCTGAAGTTTCAAAGACTTCAAGGTATTGTTC
GTTTAGTTCTTTCGAATACTGATTGGAAGTGATACTGTTGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_385:599847..600089

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063344 ID=TCONS_00063344|Name=TCONS_00063344|organism=Clytia hemisphaerica|type=transcript|length=243bp|location=Sequence derived from alignment at scaffold_385:599847..600089 (Clytia hemisphaerica)
CACCAACAGTATCACTTCCAATCAGTATTCGAAAGAACTAAACGAACAAT
ACCTTGAAGTCTTTGAAACTTCAGGTCTTCATCAAATGGTCAATTTTACA
ACACGGAAGAAAGCAATACTTGACCTTATGCTCACAAACCGACCAGGCTT
TGTCTCAAATTGCTCACCAGTCCCAGGTTTTAGTGACCACGATACTGCCG
TACTCTTAGACATGATATGCCACCCTCAGAGACATAAACCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039694XLOC_039694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063344-exon-scaffold_385-1491911889:599847..600089TCONS_00063344-exon-scaffold_385-1491911889:599847..600089Clytia hemisphaericaexon
TCONS_00063344-exon-scaffold_385-1510915933:599847..600089TCONS_00063344-exon-scaffold_385-1510915933:599847..600089Clytia hemisphaericaexon
TCONS_00063344-exon-scaffold_385-1575043694:599847..600089TCONS_00063344-exon-scaffold_385-1575043694:599847..600089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:599847..600089 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.857115	0.835822	0.970469	2.84836	0	0.913382	0	2.06328	0.722274	0.894653	1.73674	2.28334	0.57004	0.591992	0	0.522302	1.28687	0	1.82226	0	0.828707	0	0	0	0.920246	1.6426	1.17527	0	0.951331	0.969255
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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