TCONS_00063341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063341
Unique NameTCONS_00063341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063341 ID=TCONS_00063341|Name=TCONS_00063341|organism=Clytia hemisphaerica|type=transcript|length=1437bp
aGCTGTCTCTGTTTTGATTgtgttttataaaattttgtaaaacggttTGA
AATTCTCGTCAATATATCAAGAtatcatcattttcaaagataTGATAGAA
TGTCATTTCAGTTTTTGAAGATTGGATTTGAGAAAATGATTCGCACATCA
AAGACACGAAAACGTTTCTTTCTATTCGTCATAACAACGATATATATACT
CCTCGTCAACCATCTTTATTTAAATGGAATTTATGTTGTCAAAGAGATAT
CGCCAAATTCTCCTTGGTTGACAATATCTACAGATTTAAAAAGCTTTGTT
AAAAACGTTGAAAGATTATTGTTAACCAAAAAATTTGTGAACCAGCATAA
AAAACATTACACTACACCAAAAGTAAAACCCAACATTAAATTACTTAATT
CggaagatattcatgttttcaAAGGTGAAATTCTAATTTTGGTAACATCA
CATATTAAACACAGCTCGCGAAGAGATTCGATTCGTACTAGTTGGGCTAA
TCATGCAAGATTTATTGATCATAGTCAAAAGTTCAACAACGCAAGATATA
AAACATACTTTGTGACTGGCTACCTTGAAAGTTTCATACGTAAAGCAAAA
ATTGAATCTTCTACTTTCCGTGATGTTTTGATAACGAATCGTACGGAGCG
CTATTGGGACCTTTCACGGAGAATAATGTTTGGTTTTTTATGGGCTATGG
AATATTGTACTTTTGACTATCTCTTGAAAACTGACGATGATGTTTTTGTT
AACATACCAAACCTATTTACATTAATGTATACAGACCCTTTTATATTGAA
ACATAAAGATCGAATTTTTGCTGGAAAGATCGTAAAGAGTAAAAGTAGAA
CAATCCGTGAtccattttcaaaatggtatgTATCCCAAGGAGAATGGGAA
CCAGACTATTATCCACCTTTCGCAACTGGTATGGGAATAATCTTATCTAG
ATTTGTCCTTGAAAAAATGCGTTCACATTTTGACTGGATAAACCCATTCC
GATTAGATGACGTATATGTCGGAATATTAATAAATCGGGCTAACATTAGC
GGAATCGGGATAAGAAACGTCCCACAATTACGTGCGACATTGAATGAGGA
GTTTTCTGGAGCACATCAACATTATGAATGTCGTTATGTTGATAAACCAA
TTATTTATCATAAAGTGGTGCACCATTGGTGTATGGAAAAATTAACAGCA
AAAAGTATAATTAATTCTGGTACAGAAAATCCAGGCAGATATTTGAATCT
TTTAATTgttccttttattttcattaattttgttgttatttttttggtaa
aatttttgaaatgataATCATAGAGAATGGCTCCGAGCCATGAAACTTTA
GAGTATAGAATATAGTCAGTCAGGGAAAAAAGACACTTTTCAattctgct
actggcagtttcatgccactttgGCGACAATCTTCAG
Run BLAST on NCBI

protein sequence of TCONS_00063341-protein

>TCONS_00063341-protein ID=TCONS_00063341-protein|Name=TCONS_00063341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MSFQFLKIGFEKMIRTSKTRKRFFLFVITTIYILLVNHLYLNGIYVVKEI
SPNSPWLTISTDLKSFVKNVERLLLTKKFVNQHKKHYTTPKVKPNIKLLN
SEDIHVFKGEILILVTSHIKHSSRRDSIRTSWANHARFIDHSQKFNNARY
KTYFVTGYLESFIRKAKIESSTFRDVLITNRTERYWDLSRRIMFGFLWAM
EYCTFDYLLKTDDDVFVNIPNLFTLMYTDPFILKHKDRIFAGKIVKSKSR
TIRDPFSKWYVSQGEWEPDYYPPFATGMGIILSRFVLEKMRSHFDWINPF
RLDDVYVGILINRANISGIGIRNVPQLRATLNEEFSGAHQHYECRYVDKP
IIYHKVVHHWCMEKLTAKSIINSGTENPGRYLNLLIVPFIFINFVVIFLV
KFLK
Run BLAST on NCBI

transcript from alignment at scaffold_385:501371..502807

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063341 ID=TCONS_00063341|Name=TCONS_00063341|organism=Clytia hemisphaerica|type=transcript|length=1437bp|location=Sequence derived from alignment at scaffold_385:501371..502807 (Clytia hemisphaerica)
CTGAAGATTGTCGCcaaagtggcatgaaactgccagtagcagaatTGAAA
AGTGTCTTTTTTCCCTGACTGACTATATTCTATACTCTAAAGTTTCATGG
CTCGGAGCCATTCTCTATGATtatcatttcaaaaattttaccaaaaaaat
aacaacaaaattaatgaaaataaaaggaacAATTAAAAGATTCAAATATC
TGCCTGGATTTTCTGTACCAGAATTAATTATACTTTTTGCTGTTAATTTT
TCCATACACCAATGGTGCACCACTTTATGATAAATAATTGGTTTATCAAC
ATAACGACATTCATAATGTTGATGTGCTCCAGAAAACTCCTCATTCAATG
TCGCACGTAATTGTGGGACGTTTCTTATCCCGATTCCGCTAATGTTAGCC
CGATTTATTAATATTCCGACATATACGTCATCTAATCGGAATGGGTTTAT
CCAGTCAAAATGTGAACGCATTTTTTCAAGGACAAATCTAGATAAGATTA
TTCCCATACCAGTTGCGAAAGGTGGATAATAGTCTGGTTCCCATTCTCCT
TGGGATAcataccattttgaaaatggaTCACGGATTGTTCTACTTTTACT
CTTTACGATCTTTCCAGCAAAAATTCGATCTTTATGTTTCAATATAAAAG
GGTCTGTATACATTAATGTAAATAGGTTTGGTATGTTAACAAAAACATCA
TCGTCAGTTTTCAAGAGATAGTCAAAAGTACAATATTCCATAGCCCATAA
AAAACCAAACATTATTCTCCGTGAAAGGTCCCAATAGCGCTCCGTACGAT
TCGTTATCAAAACATCACGGAAAGTAGAAGATTCAATTTTTGCTTTACGT
ATGAAACTTTCAAGGTAGCCAGTCACAAAGTATGTTTTATATCTTGCGTT
GTTGAACTTTTGACTATGATCAATAAATCTTGCATGATTAGCCCAACTAG
TACGAATCGAATCTCTTCGCGAGCTGTGTTTAATATGTGATGTTACCAAA
ATTAGAATTTCACCTTtgaaaacatgaatatcttccGAATTAAGTAATTT
AATGTTGGGTTTTACTTTTGGTGTAGTGTAATGTTTTTTATGCTGGTTCA
CAAATTTTTTGGTTAACAATAATCTTTCAACGTTTTTAACAAAGCTTTTT
AAATCTGTAGATATTGTCAACCAAGGAGAATTTGGCGATATCTCTTTGAC
AACATAAATTCCATTTAAATAAAGATGGTTGACGAGGAGTATATATATCG
TTGTTATGACGAATAGAAAGAAACGTTTTCGTGTCTTTGATGTGCGAATC
ATTTTCTCAAATCCAATCTTCAAAAACTGAAATGACATTCTATCAtatct
ttgaaaatgatgataTCTTGATATATTGACGAGAATTTCAaaccgtttta
caaaattttataaaacacAATCAAAACAGAGACAGCt

Coding sequence (CDS) from alignment at scaffold_385:501371..502807

>TCONS_00063341 ID=TCONS_00063341|Name=TCONS_00063341|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_385:501371..502807 (Clytia hemisphaerica)
tcatttcaaaaattttaccaaaaaaataacaacaaaattaatgaaaataa
aaggaacAATTAAAAGATTCAAATATCTGCCTGGATTTTCTGTACCAGAA
TTAATTATACTTTTTGCTGTTAATTTTTCCATACACCAATGGTGCACCAC
TTTATGATAAATAATTGGTTTATCAACATAACGACATTCATAATGTTGAT
GTGCTCCAGAAAACTCCTCATTCAATGTCGCACGTAATTGTGGGACGTTT
CTTATCCCGATTCCGCTAATGTTAGCCCGATTTATTAATATTCCGACATA
TACGTCATCTAATCGGAATGGGTTTATCCAGTCAAAATGTGAACGCATTT
TTTCAAGGACAAATCTAGATAAGATTATTCCCATACCAGTTGCGAAAGGT
GGATAATAGTCTGGTTCCCATTCTCCTTGGGATAcataccattttgaaaa
tggaTCACGGATTGTTCTACTTTTACTCTTTACGATCTTTCCAGCAAAAA
TTCGATCTTTATGTTTCAATATAAAAGGGTCTGTATACATTAATGTAAAT
AGGTTTGGTATGTTAACAAAAACATCATCGTCAGTTTTCAAGAGATAGTC
AAAAGTACAATATTCCATAGCCCATAAAAAACCAAACATTATTCTCCGTG
AAAGGTCCCAATAGCGCTCCGTACGATTCGTTATCAAAACATCACGGAAA
GTAGAAGATTCAATTTTTGCTTTACGTATGAAACTTTCAAGGTAGCCAGT
CACAAAGTATGTTTTATATCTTGCGTTGTTGAACTTTTGACTATGATCAA
TAAATCTTGCATGATTAGCCCAACTAGTACGAATCGAATCTCTTCGCGAG
CTGTGTTTAATATGTGATGTTACCAAAATTAGAATTTCACCTTtgaaaac
atgaatatcttccGAATTAAGTAATTTAATGTTGGGTTTTACTTTTGGTG
TAGTGTAATGTTTTTTATGCTGGTTCACAAATTTTTTGGTTAACAATAAT
CTTTCAACGTTTTTAACAAAGCTTTTTAAATCTGTAGATATTGTCAACCA
AGGAGAATTTGGCGATATCTCTTTGACAACATAAATTCCATTTAAATAAA
GATGGTTGACGAGGAGTATATATATCGTTGTTATGACGAATAGAAAGAAA
CGTTTTCGTGTCTTTGATGTGCGAATCATTTTCTCAAATCCAATCTTCAA
AAACTGAAATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039691XLOC_039691Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063341-proteinTCONS_00063341-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063341-exon-scaffold_385-1491911889:501371..502807TCONS_00063341-exon-scaffold_385-1491911889:501371..502807Clytia hemisphaericaexon
TCONS_00063341-exon-scaffold_385-1510915933:501371..502807TCONS_00063341-exon-scaffold_385-1510915933:501371..502807Clytia hemisphaericaexon
TCONS_00063341-exon-scaffold_385-1575043694:501371..502807TCONS_00063341-exon-scaffold_385-1575043694:501371..502807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:501371..502807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.73153	6.5643	3.00946	1.87942	2.53244	1.72409	12.5545	12.9357	3.53011	5.09636	2.10745	1.44308	1.883	1.35689	1.65691	3.23935	4.0123	4.62376	0.42996	1.25335	3.71511	2.45247	9.97077	9.54673	2.60557	3.79262	23.7689	10.2313	14.7826	12.7415
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR002659Glyco_trans_31
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008378galactosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008378 galactosyltransferase activity
Blast
[Close]
BLAST of TCONS_00063341 vs. Swiss-Prot (Human)
Match: B3GT5 (Beta-1,3-galactosyltransferase 5 OS=Homo sapiens GN=B3GALT5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.131e-23
Identity = 62/209 (29.67%), Postives = 109/209 (52.15%), Query Frame = 1 
Query:  430 ILILVTSHIKHSSRRDSIRTSWANHARFIDHSQKFNNARYKTYFVTGYLESFIRKAKIESSTFR--DVLITNRTERYWDLSRRIMFGFLWAMEYC-TFDYLLKTDDDVFVNIPNLFTLMYTDPFILKHKDRIFAGKIVKSKSRTIRDPFSKWYVSQGEWEPDYYPPFATGMGIILSRFVLEKMRSHFDWINPFRLDDVYVGILINRANI 1047
            +++LVTS  K  + R +IR +W    R +   Q       KT+F+ G   S     +++  + R  D++  +  + Y++L+ + M G  W   +C    +++KTD D+F+N+  L     T+  + K++   F    +K     IR PFSKW+VS+ E+  D YPPF +G G + S  V  ++ +    +   +L+DV+VG+ + R NI
Sbjct:   59 LVLLVTSSHKQLAERMAIRQTWGKE-RMVKGKQ------LKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYL-----TELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQVYNVSKSVPYIKLEDVFVGLCLERLNI 255
The following BLAST results are available for this feature:
BLAST of TCONS_00063341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B3GT52.131e-2329.67Beta-1,3-galactosyltransferase 5 OS=Homo sapiens G... [more]
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