TCONS_00063338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063338
Unique NameTCONS_00063338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063338 ID=TCONS_00063338|Name=TCONS_00063338|organism=Clytia hemisphaerica|type=transcript|length=682bp
ATAGAATAAAGTTGACTTGGAAACTCTTGAATATGCTATTTGGATGAATG
GGAGGTGGACTTTGATTATTTGAAATCCTTATAGGTTTTCTCAGAGTATC
TTTAGAAATGTTATTTCCATCAATTTGTAGTTTGGAGGTTTCCTTTGATA
GATCagttacaaagaaaaatatcacCAAGACAAAAGAAGCCCATAAAAAA
CCAACCAATAAAAACGGGAAATTGTAAACTTTAAACCAAAATCcaaataa
ttgaaaatcaaCAGCCGTGAAAATAGATATTACAATCGGGCTGCCAATAT
AACTAACATAGTAACACATAGTACACATTGATAACTTTTCAGTACGTTCC
GTGCCTTCGTAGATTCGAATAATCTCTCCTTGGATTACGGATAACATTGA
ATCTGCAATGCCTTGCAGTAAACGTCCCCACAGTATGATTAATGGATGAT
AAGGTACAGCGTATATGAAATTACCGAATGCAACGAATAAACACGAGATC
ATCAATGTCTTTTTCACGTTTCGAGTTCGATCTGTATACTTGGTGACAGT
CATACAACCAATAATTGAAGAAACAAAATACGATGATGTAATCACACCAA
ACCAAATCTCAGCATTNCgcgcgaatctgattggctaaccttatcaacgg
cttttttggcacgaaattcaaaccaaatgtaa
Run BLAST on NCBI

protein sequence of TCONS_00063338-protein

>TCONS_00063338-protein ID=TCONS_00063338-protein|Name=TCONS_00063338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MTVTKYTDRTRNVKKTLMISCLFVAFGNFIYAVPYHPLIILWGRLLQGIA
DSMLSVIQGEIIRIYEGTERTEKLSMCTMCYYVSYIGSPIVISIFTAVDF
QLFGFWFKVYNFPFLLVGFLWASFVLVIFFFVTDLSKETSKLQIDGNNIS
KDTLRKPIRISNNQSPPPIHPNSIFKSFQVNFIL
Run BLAST on NCBI

transcript from alignment at scaffold_385:388509..389190

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063338 ID=TCONS_00063338|Name=TCONS_00063338|organism=Clytia hemisphaerica|type=transcript|length=682bp|location=Sequence derived from alignment at scaffold_385:388509..389190 (Clytia hemisphaerica)
ttacatttggtttgaatttcgtgccaaaaaagccgttgataaggttagcc
aatcagattcgcgcGNAATGCTGAGATTTGGTTTGGTGTGATTACATCAT
CGTATTTTGTTTCTTCAATTATTGGTTGTATGACTGTCACCAAGTATACA
GATCGAACTCGAAACGTGAAAAAGACATTGATGATCTCGTGTTTATTCGT
TGCATTCGGTAATTTCATATACGCTGTACCTTATCATCCATTAATCATAC
TGTGGGGACGTTTACTGCAAGGCATTGCAGATTCAATGTTATCCGTAATC
CAAGGAGAGATTATTCGAATCTACGAAGGCACGGAACGTACTGAAAAGTT
ATCAATGTGTACTATGTGTTACTATGTTAGTTATATTGGCAGCCCGATTG
TAATATCTATTTTCACGGCTGttgattttcaattatttgGATTTTGGTTT
AAAGTTTACAATTTCCCGTTTTTATTGGTTGGTTTTTTATGGGCTTCTTT
TGTCTTGgtgatatttttctttgtaactGATCTATCAAAGGAAACCTCCA
AACTACAAATTGATGGAAATAACATTTCTAAAGATACTCTGAGAAAACCT
ATAAGGATTTCAAATAATCAAAGTCCACCTCCCATTCATCCAAATAGCAT
ATTCAAGAGTTTCCAAGTCAACTTTATTCTAT

Coding sequence (CDS) from alignment at scaffold_385:388509..389190

>TCONS_00063338 ID=TCONS_00063338|Name=TCONS_00063338|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_385:388509..389190 (Clytia hemisphaerica)
ATGACTGTCACCAAGTATACAGATCGAACTCGAAACGTGAAAAAGACATT
GATGATCTCGTGTTTATTCGTTGCATTCGGTAATTTCATATACGCTGTAC
CTTATCATCCATTAATCATACTGTGGGGACGTTTACTGCAAGGCATTGCA
GATTCAATGTTATCCGTAATCCAAGGAGAGATTATTCGAATCTACGAAGG
CACGGAACGTACTGAAAAGTTATCAATGTGTACTATGTGTTACTATGTTA
GTTATATTGGCAGCCCGATTGTAATATCTATTTTCACGGCTGttgatttt
caattatttgGATTTTGGTTTAAAGTTTACAATTTCCCGTTTTTATTGGT
TGGTTTTTTATGGGCTTCTTTTGTCTTGgtgatatttttctttgtaactG
ATCTATCAAAGGAAACCTCCAAACTACAAATTGATGGAAATAACATTTCT
AAAGATACTCTGAGAAAACCTATAAGGATTTCAAATAATCAAAGTCCACC
TCCCATTCATCCAAATAGCATATTCAAGAGTTTCCAAGTCAACTTTATTC
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039688XLOC_039688Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063338-proteinTCONS_00063338-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063338-exon-scaffold_385-1491911889:388509..389190TCONS_00063338-exon-scaffold_385-1491911889:388509..389190Clytia hemisphaericaexon
TCONS_00063338-exon-scaffold_385-1510915933:388509..389190TCONS_00063338-exon-scaffold_385-1510915933:388509..389190Clytia hemisphaericaexon
TCONS_00063338-exon-scaffold_385-1575043694:388509..389190TCONS_00063338-exon-scaffold_385-1575043694:388509..389190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:388509..389190 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.796984	0.994887	0.747195	0	0.119235	0.0858106	0.20256	0.0972797	0.126412	0.168476	0	0	0.658642	0.805067	0.046112	0.137119	0	0.115425	0.442019	0	0.0818844	0	0.261304	0.860053	0	0.149942	0.104737	0.109762	0.417007	0.339277
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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